RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Rbp7Q9EPC5 134 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Strn3Q9ERG2 796 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Rpf2Q9JJ80 306 aaKnown RBP16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Twf2Q9Z0P5 349 aaKnown RBP16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Psmd14O35593 310 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 L1camP11627 1260 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Tatdn3Q3U1C6 294 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Rassf6Q80UQ2 353 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ankrd45Q810N6 248 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 C8aQ8K182 587 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Hoxc10P31257 342 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Tmem35bQ3U0Y2 150 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ppp1r13bQ62415 1087 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Krt12Q64291 487 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Klhl29Q80T74 875 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Actr5Q80US4 605 aaKnown RBP16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 ArpinQ9D0A3 226 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ift81O35594 676 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Zbtb16Q3UQ17 673 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Vcpip1Q8CDG3 1220 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Klhl11Q8CE33 709 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Slc35f6Q8VE96 372 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Trim60Q8VI40 466 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Eef1bO70251 225 aaKnown RBP16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 H2afxP27661 143 aaKnown RBP16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Nlrp4fQ66X05 959 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 TbataQ7TSD4 393 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Trmt2aQ8BNV1 574 aaKnown RBP16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Rcn2Q8BP92 320 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 CbsQ91WT9 561 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Taf4bG5E8Z2 855 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Arl1P61211 181 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Epha7Q61772 998 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ulbp1Q8HWA3 334 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Stat2Q9WVL2 923 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 CluhQ5SW19 1315 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Mgat1P27808 447 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 RcvrnP34057 202 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Scaf8Q6DID3 1268 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Taf12Q8VE65 161 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Extl3Q9WVL6 918 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Fgd3O88842 733 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Rasip1Q3U0S6 961 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ces1eQ64176 562 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Lrrn2Q6PHP6 730 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Olfr390Q8VEZ7 311 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cul1Q9WTX6 776 aa16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Orc1Q9Z1N2 840 aaKnown RBP16.68■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cyp2c68K7N6C2 491 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Serpini1O35684 410 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Mphosph8Q3TYA6 858 aaKnown RBP16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ttf2Q5NC05 1138 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Q80ZQ3 298 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 RadxQ8C779 850 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Leng8Q8CBY3 785 aaKnown RBP16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Stxbp5Q8K400 1152 aaKnown RBP16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 CpzQ8R4V4 654 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Mss51Q9D5Z5 446 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Eif2ak3Q9Z2B5 1114 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 RenbpP82343 430 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Trim65Q8BFW4 522 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Golph3Q9CRA5 298 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Psmg1Q9JK23 289 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Gm15262A0A140LIQ5 728 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Psmc5P62196 406 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Gucy2fQ5SDA5 1108 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Git1Q68FF6 770 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Atp6v0d2Q80SY3 350 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ubxn2aQ99KJ0 258 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Itgb1bp2Q9R000 350 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Hebp1Q9R257 190 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Nup62clA2AG10 272 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ppp1r1bQ60829 194 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 NptxrQ99J85 493 aa16.67■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ahnak2E9PYB0 1738 aaKnown RBP16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 P01734 135 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Tsta3P23591 321 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cst8P32766 142 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Siah1aP61092 282 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Adcy2Q80TL1 1090 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Tmem39bQ810L4 492 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Dnajc7Q9QYI3 494 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Zfp984A2A7A2 547 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Lonrf2B2RT44 518 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Gm8994E9PV04 411 aaKnown RBP16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Shc3Q61120 474 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Usp17leQ7M764 540 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Trappc12Q8K2L8 797 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Chn1Q91V57 459 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Casp14O89094 257 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Nkx2-5P42582 318 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Tbx2Q60707 711 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 SucoQ8C341 1250 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ttll10A4Q9F3 704 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 IkbkbO88351 757 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 RpsaP14206 295 aaKnown RBP16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Nmrk1Q91W63 195 aa16.66■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Mmrn1B2RPV6 1210 aa16.65■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 CraddO88843 199 aa16.65■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ephb4P54761 987 aa16.65■□□□□ 0.26
Retrieved 100 of 22,080 RNA–protein pairs in 17.5 ms