RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	SMX2	P40204	77 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	ARF3	P40994	183 aa	RIP-Chip data	4.58	□□□□□ -1.68	not detected
NUP116	YMR047C	COS4	P43542	379 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	YJR030C	P47101	745 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	GCV1	P48015	400 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	YAP1802	P53309	568 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	COS1	P53822	381 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	TMA20	P89886	181 aa	Predicted RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	YPL107W	Q02873	248 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	PEX25	Q02969	394 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	GTB1	Q04924	702 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	RRP45	Q05636	305 aa	Known RBP	4.58	□□□□□ -1.68
NUP116	YMR047C	ARO10	Q06408	635 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	YPR091C	Q06833	770 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	WIP1	Q2V2P8	89 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	YGR161W-C	Q3E744	92 aa		4.58	□□□□□ -1.68
NUP116	YMR047C	TY1A-DR4	O74302	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-LR1	P0C2J4	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-A	P0CX57	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-PR1	P0CX58	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-OR	P0CX59	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-PR2	P0CX60	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-F	P0CX61	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-GR2	P0CX62	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-DR5	P0CX65	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-ER2	P0CX66	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-GR3	P0CX67	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-LR1	P0CX68	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-MR2	P0CX69	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	CCA1	P21269	546 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-C	P25383	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	SNU114	P36048	1008 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	MNN9	P39107	395 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	CIN5	P40917	295 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	DIM1	P41819	318 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	CCT7	P42943	550 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-JR2	P47099	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	YDL183C	P48569	320 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	PBP1	P53297	722 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-DR2	Q03483	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	YMR210W	Q03649	449 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-DR1	Q03856	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-ML1	Q04706	440 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	CDA2	Q06703	312 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-BR	Q12217	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-B	Q12260	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-OR2	Q12293	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-DR1	Q12392	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-OR1	Q12439	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-NL2	Q12470	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY1A-GR2	Q12485	440 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	RGS2	Q99188	309 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TY2A-DR3	Q99303	438 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	HEM2	P05373	342 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	URA6	P15700	204 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	RNA14	P25298	677 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	RRP7	P25368	297 aa	Predicted RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	YIM1	P28625	365 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	SIP2	P34164	415 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	YUH1	P35127	236 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	ASC1	P38011	319 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	ETR1	P38071	380 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	LYS1	P38998	373 aa	RIP-Chip data	4.57	□□□□□ -1.68	not detected
NUP116	YMR047C	ALG5	P40350	334 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	MSS2	P40990	351 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	MPS3	P47069	682 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	AAD10	P47182	288 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	PUS4	P48567	403 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	LYS20	P48570	428 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	PPT1	P53043	513 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	ASI2	P53895	289 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	OST6	Q03723	332 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	ROY1	Q04847	553 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	ISR1	Q06098	443 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	YPS7	Q06325	596 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	RFU1	Q08003	200 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	YOL073C	Q08232	322 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	FMP27	Q06179	2628 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	CBS2	P14905	389 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	YCR090C	P25654	182 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	GCD11	P32481	527 aa	Known RBP	4.57	□□□□□ -1.68
NUP116	YMR047C	MEI5	P32489	222 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	SPO23	P33757	523 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	PTC1	P35182	281 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	GTT1	P40582	234 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	UBX6	P47049	396 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	AIM22	P47051	409 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	YJR154W	P47181	346 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	CLD1	P53264	445 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	SLM2	P53955	656 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	SED5	Q01590	340 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	FRA1	Q07825	749 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	TEN1	Q07921	160 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	UAF30	Q08747	228 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	NMD4	Q12129	218 aa		4.57	□□□□□ -1.68
NUP116	YMR047C	ATP6	P00854	259 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	STF1	P01098	86 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	CDC36	P06100	191 aa	Predicted RBP	4.56	□□□□□ -1.68
NUP116	YMR047C	DST1	P07273	309 aa		4.56	□□□□□ -1.68
NUP116	YMR047C	MRP13	P12686	339 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms