RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	TIM21	P53220	239 aa		3.95	□□□□□ -1.78
VMA22	YHR060W	OKP1	P53298	406 aa		3.95	□□□□□ -1.78
VMA22	YHR060W	PXR1	P53335	271 aa	Predicted RBP	3.95	□□□□□ -1.78
VMA22	YHR060W	MKC7	P53379	596 aa		3.95	□□□□□ -1.78
VMA22	YHR060W	YMR181C	Q03231	154 aa		3.95	□□□□□ -1.78
VMA22	YHR060W	YDR415C	Q04033	374 aa	Predicted RBP	3.95	□□□□□ -1.78
VMA22	YHR060W	BNA7	Q04066	261 aa		3.95	□□□□□ -1.78
VMA22	YHR060W	YMR034C	Q05131	434 aa	Predicted RBP	3.95	□□□□□ -1.78
VMA22	YHR060W	PAM18	Q07914	168 aa		3.95	□□□□□ -1.78
VMA22	YHR060W	BSC6	Q08280	497 aa		3.95	□□□□□ -1.78
VMA22	YHR060W	CFT1	Q06632	1357 aa	Known RBP	3.94	□□□□□ -1.78
VMA22	YHR060W	COX2	P00410	251 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	FRS2	P15625	503 aa	Known RBP	3.94	□□□□□ -1.78
VMA22	YHR060W	UTR1	P21373	530 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	POP5	P28005	173 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	GLC7	P32598	312 aa	Known RBP	3.94	□□□□□ -1.78
VMA22	YHR060W	PEX2	P32800	271 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	IMP3	P32899	183 aa	Predicted RBP	3.94	□□□□□ -1.78
VMA22	YHR060W	COS9	P36034	407 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	YKL162C	P36052	402 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	VPS52	P39904	641 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	AGP3	P43548	558 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	YJL118W	P47022	219 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	RRN9	P53437	365 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	BIO4	P53630	237 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	RSC9	Q03124	581 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	YML122C	Q03207	126 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	MRPS17	Q03246	237 aa	Predicted RBP	3.94	□□□□□ -1.78
VMA22	YHR060W	MDM36	Q06820	579 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	YAP7	Q08182	245 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	ALE1	Q08548	619 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	RAX1	Q08760	435 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	YPL199C	Q08954	240 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	YPQ1	Q12010	308 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	ATX2	Q12067	313 aa		3.94	□□□□□ -1.78
VMA22	YHR060W	RAD1	P06777	1100 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	PRB1	P09232	635 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	POL30	P15873	258 aa	Known RBP	3.93	□□□□□ -1.78
VMA22	YHR060W	FAR1	P21268	830 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	RPL24B	P24000	155 aa	Known RBP	3.93	□□□□□ -1.78
VMA22	YHR060W	RRT12	P25381	491 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	CWP1	P28319	239 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	AIM29	P36154	155 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	CHK1	P38147	527 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	YHK8	P38776	514 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	ATG7	P38862	630 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	SIM1	P40472	476 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	YIL024C	P40543	189 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	TOS2	P50078	622 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	CAF40	P53829	373 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	KTR6	P54070	446 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	HXT11	P54862	567 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	CCE1	Q03702	353 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	BCH1	Q05029	724 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	CLP1	Q08685	445 aa	Predicted RBP	3.93	□□□□□ -1.78
VMA22	YHR060W	BSC1	Q12140	328 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	CRC1	Q12289	327 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	ATG31	Q12421	196 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	HTZ1	Q12692	134 aa	Known RBP	3.93	□□□□□ -1.78
VMA22	YHR060W	IZH4	Q99393	312 aa		3.93	□□□□□ -1.78
VMA22	YHR060W	JIP3	O13555	125 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	3.92	□□□□□ -1.78	not detected
VMA22	YHR060W	CAP2	P13517	287 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	KSS1	P14681	368 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	FUS3	P16892	353 aa	Known RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	MET16	P18408	261 aa	Predicted RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	PPA2	P28239	310 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	MKK1	P32490	508 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	RAD5	P32849	1169 aa	Predicted RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	TIR2	P33890	251 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	SIP2	P34164	415 aa	Known RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	YKL097C	P34245	136 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	YHR035W	P38769	630 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	SBE22	P38814	852 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	YPT35	P38815	214 aa	Known RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	YIR014W	P40570	242 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	GUF1	P46943	645 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	TRF5	P48561	642 aa	Known RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	BIO3	P50277	480 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	ESBP6	P53918	673 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	ALG11	P53954	548 aa	Known RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	STP1	Q00947	519 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	SED5	Q01590	340 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	YPL077C	Q02831	240 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	IRC4	Q03036	179 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	YMR010W	Q03687	405 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	KRE28	Q04431	385 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	PRM6	Q04705	352 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	YMR254C	Q04838	102 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	PBP4	Q07362	185 aa	Known RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	CMS1	Q07897	291 aa	Known RBP	3.92	□□□□□ -1.78
VMA22	YHR060W	LOT6	Q07923	191 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	YLR108C	Q12259	485 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	RGT2	Q12300	763 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	GIS3	Q12418	502 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	SET6	Q12529	373 aa		3.92	□□□□□ -1.78
VMA22	YHR060W	TDH2	P00358	332 aa	Known RBP	3.91	□□□□□ -1.78
VMA22	YHR060W	NHP6B	P11633	99 aa	Known RBP	3.91	□□□□□ -1.78
VMA22	YHR060W	YAP1	P19880	650 aa	Known RBP	3.91	□□□□□ -1.78
VMA22	YHR060W	EXG1	P23776	448 aa	Known RBP	3.91	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 28.5 ms