RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 OSMRQ99650 979 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 NIFKQ9BYG3 293 aaKnown RBP17.16■□□□□ 0.34
TRIM28-203ENST00000593582 UPF2Q9HAU5 1272 aaKnown RBP17.16■□□□□ 0.34
TRIM28-203ENST00000593582 LMCD1Q9NZU5 365 aa17.16■□□□□ 0.34
TRIM28-203ENST00000593582 NOC2LQ9Y3T9 749 aaKnown RBP17.16■□□□□ 0.34
TRIM28-203ENST00000593582 DENND3A2RUS2 1198 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 DDX11L8A8MPP1 907 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 EML1O00423 815 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 DKC1O60832 514 aaKnown RBP eCLIP17.15■□□□□ 0.34
TRIM28-203ENST00000593582 GPR32O75388 356 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 QARSP47897 775 aaKnown RBP17.15■□□□□ 0.34
TRIM28-203ENST00000593582 NLRP11P59045 1033 aaKnown RBP17.15■□□□□ 0.34
TRIM28-203ENST00000593582 SKIV2LQ15477 1246 aaKnown RBP17.15■□□□□ 0.34
TRIM28-203ENST00000593582 TARBP2Q15633 366 aaKnown RBP17.15■□□□□ 0.34
TRIM28-203ENST00000593582 MTERF2Q49AM1 385 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 EPC2Q52LR7 807 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 RTN4RL1Q86UN2 441 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-203ENST00000593582 TMEM40Q8WWA1 233 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 C8orf76Q96K31 380 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 TMX1Q9H3N1 280 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 ERVK-5Q9HDB9 667 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 PRDM6Q9NQX0 595 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 THEGQ9P2T0 379 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 ST3GAL5Q9UNP4 418 aa17.15■□□□□ 0.34
TRIM28-203ENST00000593582 STAG3L1P0CL83 205 aa17.14■□□□□ 0.33
TRIM28-203ENST00000593582 HMGN5P82970 282 aaKnown RBP17.14■□□□□ 0.33
TRIM28-203ENST00000593582 BTG3Q14201 252 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-203ENST00000593582 RABEP1Q15276 862 aa17.14■□□□□ 0.33
TRIM28-203ENST00000593582 NPAS4Q8IUM7 802 aa17.14■□□□□ 0.33
TRIM28-203ENST00000593582 TMEM192Q8IY95 271 aa17.14■□□□□ 0.33
TRIM28-203ENST00000593582 LINC01465Q8N7H1 131 aa17.14■□□□□ 0.33
TRIM28-203ENST00000593582 ATXN2LQ8WWM7 1075 aaKnown RBP17.14■□□□□ 0.33
TRIM28-203ENST00000593582 SCLT1Q96NL6 688 aa17.14■□□□□ 0.33
TRIM28-203ENST00000593582 RNF216Q9NWF9 866 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-203ENST00000593582 ADGRA3Q8IWK6 1321 aa17.14■□□□□ 0.33
TRIM28-203ENST00000593582 COL4A6Q14031 1691 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 TMEM150BA6NC51 233 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 DGKIO75912 1065 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 STBD1O95210 358 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 P4HBP07237 508 aaKnown RBP17.13■□□□□ 0.33
TRIM28-203ENST00000593582 DNM2P50570 870 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 CDC42EP1Q00587 391 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 GUCY1B3Q02153 619 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 CALCRLQ16602 461 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 NCAPH2Q6IBW4 605 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 FAM228AQ86W67 206 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 FAM184AQ8NB25 1140 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 ADAM2Q99965 735 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 SH2D3AQ9BRG2 576 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 ADAMTS10Q9H324 1103 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 RC3H2Q9HBD1 1191 aaKnown RBP17.13■□□□□ 0.33
TRIM28-203ENST00000593582 LRFN2Q9ULH4 789 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 RWDD3Q9Y3V2 267 aa17.13■□□□□ 0.33
TRIM28-203ENST00000593582 ST18O60284 1047 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 NEMFO60524 1076 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 EIF4BP23588 611 aaKnown RBP17.12■□□□□ 0.33
TRIM28-203ENST00000593582 SARSP49591 514 aaKnown RBP17.12■□□□□ 0.33
TRIM28-203ENST00000593582 GPC3P51654 580 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 EPHA7Q15375 998 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 PTPROQ16827 1216 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 TJAP1Q5JTD0 557 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 SLC24A5Q71RS6 500 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 ANO5Q75V66 913 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 CRIPAKQ8N1N5 446 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 IL27Q8NEV9 243 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 NLRP7Q8WX94 980 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 SYMPKQ92797 1274 aaKnown RBP17.12■□□□□ 0.33
TRIM28-203ENST00000593582 ZNF689Q96CS4 500 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-203ENST00000593582 JPH2Q9BR39 696 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-203ENST00000593582 LXNQ9BS40 222 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 COL25A1Q9BXS0 654 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-203ENST00000593582 RGS18Q9NS28 235 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 C1orf112Q9NSG2 853 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 PCDHA12Q9UN75 941 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 PCDHB7Q9Y5E2 793 aa17.12■□□□□ 0.33
TRIM28-203ENST00000593582 PRRC2BQ5JSZ5 2229 aaKnown RBP17.11■□□□□ 0.33
TRIM28-203ENST00000593582 IGKV6-21A0A0C4DH24 114 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 H3BNC9 293 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 MGEA5O60502 916 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 MAFO75444 373 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-203ENST00000593582 IBSPP21815 317 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-203ENST00000593582 CTNNB1P35222 781 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 MRPS5P82675 430 aaKnown RBP17.11■□□□□ 0.33
TRIM28-203ENST00000593582 SPIRE1Q08AE8 756 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 GPM6BQ13491 265 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 PLA2G4FQ68DD2 849 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 EXOC8Q8IYI6 725 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 FBXO18Q8NFZ0 1043 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 CLP1Q92989 425 aaKnown RBP17.11■□□□□ 0.33
TRIM28-203ENST00000593582 ZNF668Q96K58 619 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-203ENST00000593582 CEP89Q96ST8 783 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 ZSWIM4Q9H7M6 989 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 CYP26B1Q9NR63 512 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 TTC3P53804 2025 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 EVPLQ92817 2033 aa17.11■□□□□ 0.33
TRIM28-203ENST00000593582 RB1P06400 928 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 DARSP14868 501 aaKnown RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 ATP2B1P20020 1258 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 BMPR1AP36894 532 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 DRP2Q13474 957 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms