RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PHLDB3Q6NSJ2 640 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 GPR149Q86SP6 731 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 CHAMP1Q96JM3 812 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 CDHR1Q96JP9 859 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 CASD1Q96PB1 797 aa20.79■□□□□ 0.92
CLK3-227ENST00000570296 NOC2LQ9Y3T9 749 aaKnown RBP20.79■□□□□ 0.92
CLK3-227ENST00000570296 GPR182O15218 404 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 EPCAMP16422 314 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 SPECC1Q5M775 1068 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 TMC5Q6UXY8 1006 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 CABP7Q86V35 215 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 SLC39A11Q8N1S5 342 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 TMEM87AQ8NBN3 555 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 GPRASP2Q96D09 838 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 SFXN1Q9H9B4 322 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 ST3GAL5Q9UNP4 418 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 SIT1Q9Y3P8 196 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 IRAK3Q9Y616 596 aa20.78■□□□□ 0.92
CLK3-227ENST00000570296 CCER2I3L3R5 266 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 CXCL14O95715 111 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 DCNP07585 359 aaKnown RBP20.77■□□□□ 0.92
CLK3-227ENST00000570296 CA8P35219 290 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 GIT2Q14161 759 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 ZNF528Q3MIS6 628 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 HOMER1Q86YM7 354 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 SLC22A17Q8WUG5 538 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 SECISBP2LQ93073 1101 aaKnown RBP20.77■□□□□ 0.92
CLK3-227ENST00000570296 EVI5LQ96CN4 794 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 CA14Q9ULX7 337 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 CEP295Q9C0D2 2601 aa20.77■□□□□ 0.92
CLK3-227ENST00000570296 A0A0D9SFI3 127 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.76■□□□□ 0.91
CLK3-227ENST00000570296 DCDC2BA2VCK2 349 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 ATP9AO75110 1047 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 MX1P20591 662 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 ABI1Q8IZP0 508 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 FAM227BQ96M60 508 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 MAD2L2Q9UI95 211 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 GINS2Q9Y248 185 aa20.76■□□□□ 0.91
CLK3-227ENST00000570296 MIA3Q5JRA6 1907 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 SRFP11831 508 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 MTHFD1LQ6UB35 978 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 PPFIBP1Q86W92 1011 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 TICAM2Q86XR7 235 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 OTUD7AQ8TE49 926 aaPredicted RBP20.75■□□□□ 0.91
CLK3-227ENST00000570296 TRAPPC12Q8WVT3 735 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 TMEM40Q8WWA1 233 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 PIGSQ96S52 555 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 AZI2Q9H6S1 392 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 RNF19AQ9NV58 838 aa20.75■□□□□ 0.91
CLK3-227ENST00000570296 PALM3A6NDB9 673 aaPredicted RBP20.74■□□□□ 0.91
CLK3-227ENST00000570296 ZNF213O14771 459 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 PLCB4Q15147 1175 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 LETM2Q2VYF4 491 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 ZNF589Q86UQ0 364 aaPredicted RBP20.74■□□□□ 0.91
CLK3-227ENST00000570296 MAML2Q8IZL2 1156 aaPredicted RBP20.74■□□□□ 0.91
CLK3-227ENST00000570296 EVPLQ92817 2033 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 NXPE3Q969Y0 559 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 PCYT2Q99447 389 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 ZBP1Q9H171 429 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 RIOX1Q9H6W3 641 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 ZFYVE26Q68DK2 2539 aa20.74■□□□□ 0.91
CLK3-227ENST00000570296 CNOT1A5YKK6 2376 aaKnown RBP20.74■□□□□ 0.91
CLK3-227ENST00000570296 DOCK8Q8NF50 2099 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 PNMA6FA0A0J9YX94 578 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 POLGP54098 1239 aaPredicted RBP20.73■□□□□ 0.91
CLK3-227ENST00000570296 DSC3Q14574 896 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 C15orf39Q6ZRI6 1047 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 VPS52Q8N1B4 723 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 FEZF2Q8TBJ5 459 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 TMEM169Q96HH4 297 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 CDHR5Q9HBB8 845 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 PCDHGA2Q9Y5H1 932 aa20.73■□□□□ 0.91
CLK3-227ENST00000570296 PATJQ8NI35 1801 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 B4E1Z4 1266 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 SLC35G1Q2M3R5 365 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 IFIT1BQ5T764 474 aaKnown RBP20.72■□□□□ 0.91
CLK3-227ENST00000570296 PLPPR4Q7Z2D5 763 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 SLC44A3Q8N4M1 653 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 UBAC1Q9BSL1 405 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 ARHGEF3Q9NR81 526 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 ZSWIM5Q9P217 1185 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 RALYQ9UKM9 306 aaKnown RBP20.72■□□□□ 0.91
CLK3-227ENST00000570296 FBXO4Q9UKT5 387 aa20.72■□□□□ 0.91
CLK3-227ENST00000570296 POTEMA6NI47 508 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 SPDYE4A6NLX3 237 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 CTSAP10619 480 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 ALDH7A1P49419 539 aaKnown RBP20.71■□□□□ 0.91
CLK3-227ENST00000570296 ACAP1Q15027 740 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 POTEGQ6S5H5 508 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 FAM228AQ86W67 206 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 KIAA0319LQ8IZA0 1049 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 PJA1Q8NG27 643 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 SMARCC2Q8TAQ2 1214 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 RSAD2Q8WXG1 361 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 CUL5Q93034 780 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 JPH1Q9HDC5 661 aaPredicted RBP20.71■□□□□ 0.91
CLK3-227ENST00000570296 EPS15L1Q9UBC2 864 aa20.71■□□□□ 0.91
CLK3-227ENST00000570296 CARNS1A5YM72 827 aa20.7■□□□□ 0.9
CLK3-227ENST00000570296 PIK3CDO00329 1044 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms