RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 GPR19Q15760 415 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 DDB1Q16531 1140 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 KRTAP15-1Q3LI76 137 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 RGL3Q3MIN7 710 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 CCDC181Q5TID7 509 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 HLA-DQA1Q5Y7H0 255 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PAQR3Q6TCH7 311 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 TPH2Q8IWU9 490 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 CCDC146Q8IYE0 955 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 LZTR1Q8N653 840 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 EFHBQ8N7U6 833 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 DNERQ8NFT8 737 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 SMARCC2Q8TAQ2 1214 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 USP33Q8TEY7 942 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 TGFBRAP1Q8WUH2 860 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 CHMP4CQ96CF2 233 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 AHCYL2Q96HN2 611 aaKnown RBP2.2□□□□□ -2.06
USP3-209ENST00000558925 FUBP3Q96I24 572 aaKnown RBP eCLIP2.2□□□□□ -2.06
USP3-209ENST00000558925 RHOBTB2Q9BYZ6 727 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 CDH19Q9H159 772 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 SEMA4AQ9H3S1 761 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 EPB41L1Q9H4G0 881 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 ZMAT4Q9H898 229 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 TOMM22Q9NS69 142 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 IP6K2Q9UHH9 426 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 ZNF180Q9UJW8 692 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 SRPK3Q9UPE1 567 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PCDHGA9Q9Y5G4 932 aaKnown RBP2.2□□□□□ -2.06
USP3-209ENST00000558925 PCDHGA8Q9Y5G5 932 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PCDHGA7Q9Y5G6 932 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PCDHGA6Q9Y5G7 932 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PCDHGA3Q9Y5H0 932 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 PCDHGA2Q9Y5H1 932 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 X6R8D5 127 aa2.2□□□□□ -2.06
USP3-209ENST00000558925 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 CCDC194A0A1B0GVG4 234 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 RASSF10A6NK89 507 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 FAM90A27PA6NNH2 459 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 GSTA4O15217 222 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 PRC1O43663 620 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 KDM1AO60341 852 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 B4GALT3O60512 393 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 PEX14O75381 377 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 ULK1O75385 1050 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 DGKIO75912 1065 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 ABLIM3O94929 683 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 FBXO21O94952 628 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 C4BPAP04003 597 aaKnown RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 CLEC2LP0C7M8 214 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 NCAM1P13591 858 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 ATF3P18847 181 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 ENDOUP21128 410 aaKnown RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 GTF2A2P52657 109 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 TGFB2P61812 414 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 SMAD3P84022 425 aaKnown RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 GRIN1Q05586 938 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 KLF1Q13351 362 aaPredicted RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 TUSC3Q13454 348 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 LRRC32Q14392 662 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 TMEM132BQ14DG7 1078 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 MLC1Q15049 377 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 SMAD2Q15796 467 aaKnown RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 FIGNQ5HY92 759 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 CATSPEREQ5SY80 951 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 LRCH2Q5VUJ6 765 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 STEAP3Q658P3 488 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 KRTAP5-11Q6L8G4 156 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 PGM2L1Q6PCE3 622 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 C11orf74Q86VG3 221 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 CHPFQ8IZ52 775 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 C1orf162Q8NEQ5 155 aaPredicted RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 TTC8Q8TAM2 541 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 UHMK1Q8TAS1 419 aaKnown RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.19□□□□□ -2.06
USP3-209ENST00000558925 JPH3Q8WXH2 748 aaPredicted RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 RTF1Q92541 710 aaKnown RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 ERCC4Q92889 916 aaPredicted RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 C8orf48Q96LL4 319 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 PTPN18Q99952 460 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 PRDM12Q9H4Q4 367 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 SLC6A20Q9NP91 592 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 RIC8BQ9NVN3 520 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP2.19□□□□□ -2.065e-6■■■□□ 19.1
USP3-209ENST00000558925 NTMQ9P121 344 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 DSEQ9UL01 958 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 ZBTB21Q9ULJ3 1066 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 EDARQ9UNE0 448 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 COA3Q9Y2R0 106 aaPredicted RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 LUC7L2Q9Y383 392 aaKnown RBP2.19□□□□□ -2.06
USP3-209ENST00000558925 SPO11Q9Y5K1 396 aa2.19□□□□□ -2.06
USP3-209ENST00000558925 ZNF536O15090 1300 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 WASHC2AQ641Q2 1341 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 A0A1W2PQ27 194 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 A0A1W2PQ64 194 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 A0A1W2PQC6 194 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 A0A1W2PQD8 194 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 TCRBV5S2A0A599 114 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 PRAMEF25A6NGN4 478 aa2.18□□□□□ -2.06
USP3-209ENST00000558925 VSTM5A8MXK1 200 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms