RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CELF4Q9BZC1 486 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 MTIF3Q9H2K0 278 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 PRO3102Q9H379 93 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 ANKEF1Q9NU02 776 aa12.78□□□□□ -0.36
CCDC88C-212ENST00000556767 ARHGEF35A5YM69 484 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 RBAK-RBAKDNI3L0D1 243 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 MAFO75444 373 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 BRD1O95696 1058 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 XRCC6P12956 609 aaKnown RBP eCLIP12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 NCLP19338 710 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 UBA7P41226 1012 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 GRIN1Q05586 938 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 MGAT3Q09327 533 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 EMC2Q15006 297 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 SLC39A14Q15043 492 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 ECM1Q16610 540 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 KIZQ2M2Z5 673 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 CABP7Q86V35 215 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 EXOC8Q8IYI6 725 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 SEPT8Q92599 483 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 ZNF668Q96K58 619 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 AK8Q96MA6 479 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 MTRQ99707 1265 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 DDX19AQ9NUU7 478 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 SUCLA2Q9P2R7 463 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 PPME1Q9Y570 386 aa12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 MKI67P46013 3256 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-212ENST00000556767 MYH15Q9Y2K3 1946 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 A0A1W2PPC1 479 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 USO1O60763 962 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 CXCL10P02778 98 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 MUTP22033 750 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 LONP1P36776 959 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 NASPP49321 788 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 RARRES1P49788 294 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 NLRP11P59045 1033 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 DNM1Q05193 864 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 DRP2Q13474 957 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 GPNMBQ14956 572 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 SPECC1Q5M775 1068 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 CNKSR3Q6P9H4 555 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 MAEAQ7L5Y9 396 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 RHPN2Q8IUC4 686 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 DBF4BQ8NFT6 615 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 NLRP7Q8WX94 980 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 TMEM143Q96AN5 459 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 CALML4Q96GE6 196 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 CEP89Q96ST8 783 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 OSMRQ99650 979 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 OSBPL7Q9BZF2 842 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 CSRNP2Q9H175 543 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 DHX33Q9H6R0 707 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 ATP6V0A4Q9HBG4 840 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 FBXO2Q9UK22 296 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 DBR1Q9UK59 544 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 CFAP45Q9UL16 551 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 DNM3Q9UQ16 869 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 ZDHHC9Q9Y397 364 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 KDM3AQ9Y4C1 1321 aa12.76□□□□□ -0.37
CCDC88C-212ENST00000556767 IGKV6-21A0A0C4DH24 114 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 E9PMD0 336 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 SPTLC2O15270 562 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 DGAT1O75907 488 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 SSBP05455 408 aaKnown RBP eCLIP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 KCNJ6P48051 423 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 CRYBB1P53674 252 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 NUCB2P80303 420 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 NFX1Q12986 1120 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 MKRN4PQ13434 485 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 IKBKEQ14164 716 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 LPIN1Q14693 890 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 FBXO47Q5MNV8 452 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 PADI6Q6TGC4 694 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 LINC01465Q8N7H1 131 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 KRI1Q8N9T8 703 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 LINC00301Q8NCQ3 95 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 TCP11Q8WWU5 503 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 PSPC1Q8WXF1 523 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 HERVK_113Q902F9 699 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 VWCEQ96DN2 955 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 NLRP4Q96MN2 994 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 CLIC6Q96NY7 704 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 MMTAG2Q9BU76 263 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 IFIH1Q9BYX4 1025 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 NT5C3AQ9H0P0 336 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 BHMT2Q9H2M3 363 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 CDHR5Q9HBB8 845 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 CXXC1Q9P0U4 656 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 ATP6V1DQ9Y5K8 247 aa12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 SRPRBQ9Y5M8 271 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-212ENST00000556767 ARID2Q68CP9 1835 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 TNRC18O15417 2968 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 GAS2O43903 313 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 GPR32O75388 356 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 RPS6KA5O75582 802 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 YEATS4O95619 227 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 CD52P31358 61 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 TXLNAP40222 546 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 GPC3P51654 580 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 CDC42EP1Q00587 391 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms