RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 KIF3AQ9Y496 699 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 LARGE1O95461 756 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 STAG3L1P0CL83 205 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 RXRAP19793 462 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 ZNF654Q8IZM8 581 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 CMTR1Q8N1G2 835 aaKnown RBP12.92□□□□□ -0.34
VPS33B-204ENST00000554660 FBXL16Q8N461 479 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 CFAP54Q96N23 3096 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 PHF7Q9BWX1 381 aaPredicted RBP12.92□□□□□ -0.34
VPS33B-204ENST00000554660 TLE6Q9H808 572 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 JPH1Q9HDC5 661 aaPredicted RBP12.92□□□□□ -0.34
VPS33B-204ENST00000554660 DDX19AQ9NUU7 478 aaKnown RBP12.92□□□□□ -0.34
VPS33B-204ENST00000554660 LRFN2Q9ULH4 789 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 TPCN1Q9ULQ1 816 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 UBIAD1Q9Y5Z9 338 aa12.92□□□□□ -0.34
VPS33B-204ENST00000554660 hCG_1642624A0A1W2PR95 340 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 RRN3P2A6NIE6 340 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 MGEA5O60502 916 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 DDAH1O94760 285 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 CCDC192P0DO97 292 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 SP100P23497 879 aaPredicted RBP12.91□□□□□ -0.34
VPS33B-204ENST00000554660 SIGLEC14Q08ET2 396 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 PLCB4Q15147 1175 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 SPOUT1Q5T280 376 aaKnown RBP12.91□□□□□ -0.34
VPS33B-204ENST00000554660 LARP1BQ659C4 914 aaKnown RBP12.91□□□□□ -0.34
VPS33B-204ENST00000554660 RBM43Q6ZSC3 357 aaKnown RBP12.91□□□□□ -0.34
VPS33B-204ENST00000554660 RAB11FIP4Q86YS3 637 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 MB21D2Q8IYB1 491 aaPredicted RBP12.91□□□□□ -0.34
VPS33B-204ENST00000554660 IGDCC4Q8TDY8 1250 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 MICAL1Q8TDZ2 1067 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 ASIC4Q96FT7 647 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 CELF4Q9BZC1 486 aaKnown RBP12.91□□□□□ -0.34
VPS33B-204ENST00000554660 ZSCAN16Q9H4T2 348 aaPredicted RBP12.91□□□□□ -0.34
VPS33B-204ENST00000554660 PSTPIP2Q9H939 334 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 LY9Q9HBG7 655 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 TLR9Q9NR96 1032 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 GINS2Q9Y248 185 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 MYO15AQ9UKN7 3530 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 LOXHD1Q8IVV2 1947 aa12.91□□□□□ -0.34
VPS33B-204ENST00000554660 MYH15Q9Y2K3 1946 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 SPDYE3A6NKU9 549 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 GFRA3O60609 400 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 RPLP2P05387 115 aaKnown RBP12.9□□□□□ -0.34
VPS33B-204ENST00000554660 KIF5BP33176 963 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 SARSP49591 514 aaKnown RBP12.9□□□□□ -0.34
VPS33B-204ENST00000554660 KRT76Q01546 638 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 NFX1Q12986 1120 aaKnown RBP12.9□□□□□ -0.34
VPS33B-204ENST00000554660 PKN1Q16512 942 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 DUSP6Q16828 381 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 SRBD1Q8N5C6 995 aaKnown RBP12.9□□□□□ -0.34
VPS33B-204ENST00000554660 TMEM40Q8WWA1 233 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 SUSD6Q92537 303 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 PRRX2Q99811 253 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 APOL5Q9BWW9 433 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 AGXT2Q9BYV1 514 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 AZI2Q9H6S1 392 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 JADE2Q9NQC1 790 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 SLC9A2Q9UBY0 812 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 PCDHA2Q9Y5H9 948 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 SQORQ9Y6N5 450 aa12.9□□□□□ -0.34
VPS33B-204ENST00000554660 TBKBP1A7MCY6 615 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 FGF18O76093 207 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PDGFBP01127 241 aaPredicted RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PTMAP06454 111 aaKnown RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 ERVFC1P60507 584 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 ACTR2P61160 394 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 HMGN5P82970 282 aaKnown RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 DNM1Q05193 864 aaKnown RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 APOBRQ0VD83 1088 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 COL9A3Q14050 684 aaPredicted RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 TOB2Q14106 344 aaPredicted RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PTPN21Q16825 1174 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PLPP4Q5VZY2 271 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 THNSL1Q8IYQ7 743 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 CYP2W1Q8TAV3 490 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 ATP8B4Q8TF62 1192 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 GTF3C6Q969F1 213 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 CHAMP1Q96JM3 812 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PGBD1Q96JS3 809 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PRIMPOLQ96LW4 560 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 NEK1Q96PY6 1258 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PPP1R16BQ96T49 567 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 MAP3K14Q99558 947 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 GDPD2Q9HCC8 539 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 ERVK-5Q9HDB9 667 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 KCNH7Q9NS40 1196 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 CDH22Q9UJ99 828 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PCDHA6Q9UN73 950 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 NOC2LQ9Y3T9 749 aaKnown RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PCDHB7Q9Y5E2 793 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PCDHB12Q9Y5F1 795 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 PCDHA8Q9Y5H6 950 aa12.89□□□□□ -0.35
VPS33B-204ENST00000554660 FNDC1Q4ZHG4 1894 aaPredicted RBP12.89□□□□□ -0.35
VPS33B-204ENST00000554660 KDM3AQ9Y4C1 1321 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 ZDBF2Q9HCK1 2354 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 SMIM35A0A1B0GVV1 85 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 GOLGA6L6A8MZA4 724 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 DYNC1I1O14576 645 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 PRC1O43663 620 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 FGFR1P11362 822 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms