RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GNGT1P63211 74 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 TRAF1Q13077 416 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 PNOCQ13519 176 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 PGM5Q15124 567 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 KCNA10Q16322 511 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 PREPLQ4J6C6 727 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 HSP90AA4PQ58FG1 418 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 MYSM1Q5VVJ2 828 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 IQSEC1Q6DN90 963 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 CCSAPQ6IQ19 270 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 RAD9BQ6WBX8 426 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 SEPT14Q6ZU15 432 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 OTUD6BQ8N6M0 293 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 RIN2Q8WYP3 895 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 MAP3K20Q9NYL2 800 aaKnown RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 HOOK1Q9UJC3 728 aaKnown RBP8.43□□□□□ -1.06
LIMA1-216ENST00000552909 MYO6Q9UM54 1294 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 KIAA1217Q5T5P2 1943 aa8.43□□□□□ -1.06
LIMA1-216ENST00000552909 CDH23Q9H251 3354 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 RBM47A0AV96 593 aaKnown RBP8.42□□□□□ -1.06
LIMA1-216ENST00000552909 BTBD18B2RXH4 712 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 KIF28PB7ZC32 967 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 KBTBD13C9JR72 458 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 MYO1FO00160 1098 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 STXBP3O00186 592 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 SCG2P13521 617 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 ARHGAP25P42331 645 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 GJA9P57773 515 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 MRPS9P82933 396 aaKnown RBP8.42□□□□□ -1.06
LIMA1-216ENST00000552909 SAFBQ15424 915 aaKnown RBP eCLIP8.42□□□□□ -1.06
LIMA1-216ENST00000552909 STXBP2Q15833 593 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 LY6KQ17RY6 165 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 NBPF20Q3BBV1 942 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 DUSP28Q4G0W2 176 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 GNASQ5JWF2 1037 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 RNF180Q86T96 592 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 TLK2Q86UE8 772 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 VSIG10LQ86VR7 867 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 PPFIBP1Q86W92 1011 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 FMNL3Q8IVF7 1028 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 IWS1Q96ST2 819 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 MAF1Q9H063 256 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 CD248Q9HCU0 757 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 BARHL2Q9NY43 387 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 MYO1AQ9UBC5 1043 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 TRIOBPQ9H2D6 2365 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 A0A0U1RQJ8 604 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 GOLGA6BA6NDN3 693 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 A6NNZ2 444 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 PIK3CDO00329 1044 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 NEBLO76041 1014 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 MMP1P03956 469 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 ASGR1P07306 291 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 TXNP10599 105 aaKnown RBP8.42□□□□□ -1.06
LIMA1-216ENST00000552909 NAPAP54920 295 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 PFKFB3Q16875 520 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-216ENST00000552909 TUBB8Q3ZCM7 444 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 CCDC62Q6P9F0 684 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 SAMD3Q8N6K7 520 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 ATRIPQ8WXE1 791 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 HTATIP2Q9BUP3 242 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 UPF3AQ9H1J1 476 aaKnown RBP8.42□□□□□ -1.06
LIMA1-216ENST00000552909 BCAS3Q9H6U6 928 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 DACH1Q9UI36 760 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 ODF2LQ9ULJ1 636 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 NFE2L3Q9Y4A8 694 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 GRIN2DO15399 1336 aa8.42□□□□□ -1.06
LIMA1-216ENST00000552909 MYH7BA7E2Y1 1941 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 A0A1W2PQ45 241 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 A0A1W2PQY0 241 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 TARSL2A2RTX5 802 aaKnown RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SMCO2A6NFE2 343 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 H0YGN5 161 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 MEFVO15553 781 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 EVI5O60447 810 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 ZNF18P17022 549 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 ACLYP53396 1101 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 NLRP5P59047 1200 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SP2Q02086 613 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 CRYMQ14894 314 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 NCAPH2Q6IBW4 605 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SLC39A5Q6ZMH5 540 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 MICALCLQ6ZW33 695 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 DIS3L2Q8IYB7 885 aaKnown RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 OXER1Q8TDS5 423 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SCFD2Q8WU76 684 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SGSM3Q96HU1 749 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 FAXDC2Q96IV6 333 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 RABEP2Q9H5N1 569 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 PHF24Q9UPV7 400 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 HPSEQ9Y251 543 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SAMM50Q9Y512 469 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 B4DLN1 442 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 GOLGA8KD6RF30 607 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 AGPSO00116 658 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 NDUFAB1O14561 156 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 SORBS3O60504 671 aa8.41□□□□□ -1.06
LIMA1-216ENST00000552909 CST5P28325 142 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 MARCKSP29966 332 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-216ENST00000552909 MRPL12P52815 198 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms