RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PLA2G4BP0C869 781 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 SKILP12757 684 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 ATP1A3P13637 1013 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 DNM2P50570 870 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 MCCD1P59942 119 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CENPCQ03188 943 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 PPATQ06203 517 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 EHHADHQ08426 723 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 SPP2Q13103 211 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 TBX2Q13207 712 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-239ENST00000545694 EPHA7Q15375 998 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 TCP11X2Q5H9J9 407 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 LRCH2Q5VUJ6 765 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 KLHL10Q6JEL2 608 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CATSPERGQ6ZRH7 1159 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 STXBP4Q6ZWJ1 553 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 OTOP1Q7RTM1 612 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 FILIP1Q7Z7B0 1213 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 PPFIBP1Q86W92 1011 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CNGA4Q8IV77 575 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 SYT2Q8N9I0 419 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-239ENST00000545694 RETREG2Q8NC44 543 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 SLC17A8Q8NDX2 589 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CHST13Q8NET6 341 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 TRPM4Q8TD43 1214 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 GTF3C2Q8WUA4 911 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CACTINQ8WUQ7 758 aaKnown RBP6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CLEC4DQ8WXI8 215 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 PRIMPOLQ96LW4 560 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CEP63Q96MT8 703 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 PANX2Q96RD6 677 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 NACC1Q96RE7 527 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 NUP58Q9BVL2 599 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 TIPINQ9BVW5 301 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 TEKT3Q9BXF9 490 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 TEX13BQ9BXU2 312 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 KCNF1Q9H3M0 494 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 RPAP3Q9H6T3 665 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-239ENST00000545694 RNF181Q9P0P0 153 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 SEL1LQ9UBV2 794 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 ADD3Q9UEY8 706 aaKnown RBP6.87□□□□□ -1.31
SYNE1-239ENST00000545694 FBXO40Q9UH90 709 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 TCEAL9Q9UHQ7 104 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 VAV3Q9UKW4 847 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 KIAA1024Q9UPX6 916 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CTNND2Q9UQB3 1225 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 AFG3L2Q9Y4W6 797 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 ZHX2Q9Y6X8 837 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 UBE4BO95155 1302 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 LOC102724159A0A0B4J2E5 919 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 MYMKA6NI61 221 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 KCNJ18B7U540 433 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 MSTNO14793 375 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 N4BP3O15049 544 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ARHGAP6O43182 974 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ZSCAN12O43309 604 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 LYPLA2O95372 231 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 IL2RAP01589 272 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ITGB2P05107 769 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 KRT18P05783 430 aaKnown RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ALAS1P13196 640 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 SCP2P22307 547 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 HOXA13P31271 388 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 SFNP31947 248 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ABCD1P33897 745 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 EPS15P42566 896 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 HIRAP54198 1017 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 SLC12A3P55017 1021 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 FKBP3Q00688 224 aaKnown RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 PPP2R3AQ06190 1150 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 PABPC4Q13310 644 aaKnown RBP eCLIP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ALCAMQ13740 583 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 KCNJ12Q14500 433 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 MCM6Q14566 821 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 PWP2Q15269 919 aaKnown RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ZYXQ15942 572 aaKnown RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 CCDC144BQ3MJ40 725 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 WDR44Q5JSH3 913 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 FAM26FQ5R3K3 315 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 TTI2Q6NXR4 508 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 B3GNT9Q6UX72 402 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 LBX2Q6XYB7 198 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 RNF207Q6ZRF8 634 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 NLRX1Q86UT6 975 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 CCDC84Q86UT8 332 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 PNMA8AQ86V59 439 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 CATSPER3Q86XQ3 398 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ERO1BQ86YB8 467 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 MYOCDQ8IZQ8 938 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 CSGALNACT2Q8N6G5 542 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 DNERQ8NFT8 737 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 SYTL5Q8TDW5 730 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 STAMQ92783 540 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 GPRASP2Q96D09 838 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 DNAJC19Q96DA6 116 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 NAP1L5Q96NT1 182 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-239ENST00000545694 IWS1Q96ST2 819 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 HSD17B14Q9BPX1 270 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 ZNF577Q9BSK1 485 aa6.86□□□□□ -1.31
SYNE1-239ENST00000545694 GLIS2Q9BZE0 524 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms