RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 RANBP17Q9H2T7 1088 aaKnown RBP14.36□□□□□ -0.11
LDLR-203ENST00000535915 GOLPH3Q9H4A6 298 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.36□□□□□ -0.11
LDLR-203ENST00000535915 ESYT3A0FGR9 886 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 ZSCAN5CA6NGD5 496 aaPredicted RBP14.36□□□□□ -0.11
LDLR-203ENST00000535915 FAM178BQ8IXR5 827 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 TSEN2Q8NCE0 465 aaKnown RBP14.36□□□□□ -0.11
LDLR-203ENST00000535915 FAM76AQ8TAV0 307 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 CAVIN3Q969G5 261 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 BORCS6Q96GS4 357 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 NACC1Q96RE7 527 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 RUFY1Q96T51 708 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 NFU1Q9UMS0 254 aa14.36□□□□□ -0.11
LDLR-203ENST00000535915 MRPL11Q9Y3B7 192 aaKnown RBP14.36□□□□□ -0.11
LDLR-203ENST00000535915 C21orf2O43822 256 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 HSF2BPO75031 334 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 GFPT2O94808 682 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 CARSP49589 748 aaKnown RBP14.35□□□□□ -0.11
LDLR-203ENST00000535915 PTPROQ16827 1216 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 HS2ST1Q7LGA3 356 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 TEX2Q8IWB9 1127 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 USP38Q8NB14 1042 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 FAM151AQ8WW52 585 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 UNC45AQ9H3U1 944 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 GDF3Q9NR23 364 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 FRMPD4Q14CM0 1322 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 RPS6KA5O75582 802 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 KIF4AO95239 1232 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 VIL1P09327 827 aaKnown RBP14.35□□□□□ -0.11
LDLR-203ENST00000535915 ARP10275 920 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 FERP16591 822 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 DLGAP5Q15398 846 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 STXBP4Q6ZWJ1 553 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 ZNF720Q7Z2F6 126 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 WDR11Q9BZH6 1224 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 WRAP73Q9P2S5 460 aaPredicted RBP14.35□□□□□ -0.11
LDLR-203ENST00000535915 SEL1LQ9UBV2 794 aa14.35□□□□□ -0.11
LDLR-203ENST00000535915 ZNF70Q9UC06 446 aaPredicted RBP14.35□□□□□ -0.11
LDLR-203ENST00000535915 OPA1O60313 960 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 H2AFZP0C0S5 128 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 ANXA13P27216 316 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 STAT1P42224 750 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 CYP2J2P51589 502 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 TNNC1P63316 161 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 PAK2Q13177 524 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 ODR4Q5SWX8 454 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 LRRC31Q6UY01 552 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 H2AFVQ71UI9 128 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 VCPKMTQ9H867 229 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 VEZTQ9HBM0 779 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 RSPH14Q9UHP6 348 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 FRMD4BQ9Y2L6 1034 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 RAD17O75943 681 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 NFIL3Q16649 462 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 ALS2CLQ60I27 953 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 RSBN1LQ6PCB5 846 aaPredicted RBP14.34□□□□□ -0.11
LDLR-203ENST00000535915 KLHL7Q8IXQ5 586 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 LRRC57Q8N9N7 239 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 U2AF1L4Q8WU68 220 aaKnown RBP14.34□□□□□ -0.11
LDLR-203ENST00000535915 MKNK1Q9BUB5 465 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 TEKT3Q9BXF9 490 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 TMCO5BA8MYB1 307 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 GOLGA8KD6RF30 607 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 DDX39AO00148 427 aaKnown RBP14.34□□□□□ -0.11
LDLR-203ENST00000535915 CES2O00748 559 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 CEP104O60308 925 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 EVI5O60447 810 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 MUTP22033 750 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 FMO5P49326 533 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 SETQ01105 290 aaPredicted RBP14.34□□□□□ -0.11
LDLR-203ENST00000535915 NNTQ13423 1086 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 MIGA2Q7L4E1 593 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 BANK1Q8NDB2 785 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 TPCN2Q8NHX9 752 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 PBKQ96KB5 322 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 FIZ1Q96SL8 496 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 LXNQ9BS40 222 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 RASSF4Q9H2L5 321 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 FBXO28Q9NVF7 368 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 ODF2LQ9ULJ1 636 aa14.34□□□□□ -0.11
LDLR-203ENST00000535915 UBE4BO95155 1302 aa14.33□□□□□ -0.11
LDLR-203ENST00000535915 IPO5O00410 1097 aaKnown RBP14.33□□□□□ -0.12
LDLR-203ENST00000535915 DDX3XO00571 662 aaKnown RBP eCLIP14.33□□□□□ -0.128e-9■□□□□ 10
LDLR-203ENST00000535915 FAM153BP0C7A2 387 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 ZNF131P52739 623 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 PPFIA1Q13136 1202 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 FAM153CQ494X1 144 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 LDHDQ86WU2 507 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 OGFOD1Q8N543 542 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 SH3GL2Q99962 352 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 EFCC1Q9HA90 598 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 AGPAT3Q9NRZ7 376 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 FAM153AQ9UHL3 310 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 CNTNAP1P78357 1384 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 ARHGEF35A5YM69 484 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 RAD51CO43502 376 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 SOX5P35711 763 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 FOXR1Q6PIV2 292 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 PEX26Q7Z412 305 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 FAM160B2Q86V87 743 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms