RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 DZANK1Q9NVP4 752 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 WNT16Q9UBV4 365 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 PUF60Q9UHX1 559 aaKnown RBP7.53□□□□□ -1.2
CD44-237ENST00000534082 ZNF215Q9UL58 517 aaPredicted RBP7.53□□□□□ -1.2
CD44-237ENST00000534082 CA14Q9ULX7 337 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-237ENST00000534082 CDY2AQ9Y6F7 541 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 ASH1LQ9NR48 2969 aaKnown RBP7.53□□□□□ -1.2
CD44-237ENST00000534082 ABCB11O95342 1321 aa7.52□□□□□ -1.2
CD44-237ENST00000534082 NRCAMQ92823 1304 aa7.52□□□□□ -1.2
CD44-237ENST00000534082 MAST4O15021 2626 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 IGF2RP11717 2491 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 TBKBP1A7MCY6 615 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 M0R2C6 588 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 SLC30A4O14863 429 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 TOP1P11387 765 aaKnown RBP7.52□□□□□ -1.21
CD44-237ENST00000534082 MYCLP12524 364 aaPredicted RBP7.52□□□□□ -1.21
CD44-237ENST00000534082 LAG3P18627 525 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 TGM1P22735 817 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 MRPS6P82932 125 aaKnown RBP7.52□□□□□ -1.21
CD44-237ENST00000534082 PLCB3Q01970 1234 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 SP2Q02086 613 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 ZNF543Q08ER8 600 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 KANK3Q6NY19 840 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 OTOP3Q7RTS5 596 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 TMC7Q7Z402 723 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 MCF2L2Q86YR7 1114 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 MAML2Q8IZL2 1156 aaPredicted RBP7.52□□□□□ -1.21
CD44-237ENST00000534082 NETO1Q8TDF5 533 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 GPKOWQ92917 476 aaPredicted RBP eCLIP7.52□□□□□ -1.21
CD44-237ENST00000534082 USP26Q9BXU7 913 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 NACAP1Q9BZK3 213 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 NAPBQ9H115 298 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 EPC1Q9H2F5 836 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 SIT1Q9Y3P8 196 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 PCDHGA2Q9Y5H1 932 aa7.52□□□□□ -1.21
CD44-237ENST00000534082 C2orf71A6NGG8 1288 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 PATL2C9JE40 543 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 RANBP6O60518 1105 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 CLASP2O75122 1294 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 PROS1P07225 676 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 HSPD1P10809 573 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 PMLP29590 882 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 GCGRP47871 477 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 SARSP49591 514 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 SHC2P98077 582 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 PAK2Q13177 524 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 SMC1AQ14683 1233 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 CDC37Q16543 378 aaPredicted RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 ZNF528Q3MIS6 628 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 UTP14CQ5TAP6 766 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 PHLDB3Q6NSJ2 640 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 ITPRIPQ8IWB1 547 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 IL31RAQ8NI17 732 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 FEZF2Q8TBJ5 459 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 DNAJB3Q8WWF6 145 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 BORCS6Q96GS4 357 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 SPSB2Q99619 263 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 GPR20Q99678 358 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 TMEM47Q9BQJ4 181 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 PDCD2LQ9BRP1 358 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 BCAS3Q9H6U6 928 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 ARHGEF3Q9NR81 526 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 TYW1Q9NV66 732 aaKnown RBP7.51□□□□□ -1.21
CD44-237ENST00000534082 IGSF9Q9P2J2 1179 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 TUBE1Q9UJT0 475 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 FBXO4Q9UKT5 387 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 PADI3Q9ULW8 664 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 PCDHB7Q9Y5E2 793 aa7.51□□□□□ -1.21
CD44-237ENST00000534082 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.5□□□□□ -1.21
CD44-237ENST00000534082 NRG2O14511 850 aaPredicted RBP7.5□□□□□ -1.21
CD44-237ENST00000534082 ANP32CO43423 234 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 CFBP00751 764 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 SNHG28P0DPA3 235 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 TGFB3P10600 412 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 SRFP11831 508 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 GLULP15104 373 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 EPCAMP16422 314 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 CA8P35219 290 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 PPM1AP35813 382 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 PBX3P40426 434 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 CTDSPL2Q05D32 466 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 PPFIA1Q13136 1202 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 FAM102BQ5T8I3 360 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 ZKSCAN2Q63HK3 967 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 METTL7BQ6UX53 244 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 TMC5Q6UXY8 1006 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 MRPL43Q8N983 215 aaKnown RBP7.5□□□□□ -1.21
CD44-237ENST00000534082 KBTBD3Q8NAB2 608 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 PJA1Q8NG27 643 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 GPR152Q8TDT2 470 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 ATRIPQ8WXE1 791 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 RSAD2Q8WXG1 361 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 FOXQ1Q9C009 403 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 FAM49AQ9H0Q0 323 aaPredicted RBP7.5□□□□□ -1.21
CD44-237ENST00000534082 CPVLQ9H3G5 476 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 TMX1Q9H3N1 280 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 CWH43Q9H720 699 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 SPATA6Q9NWH7 488 aaPredicted RBP7.5□□□□□ -1.21
CD44-237ENST00000534082 GMEB2Q9UKD1 530 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms