RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 ITGB5P18084 799 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 KLRC1P26715 233 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 SLC26A2P50443 739 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 STAT5BP51692 787 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 GIT2Q14161 759 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 PLCB4Q15147 1175 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 RARS2Q5T160 578 aaKnown RBP13.25□□□□□ -0.29
RNF4-216ENST00000511859 ZC3H14Q6PJT7 736 aaKnown RBP13.25□□□□□ -0.29
RNF4-216ENST00000511859 OTOP3Q7RTS5 596 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 TMEM87AQ8NBN3 555 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 CASD1Q96PB1 797 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 JPH1Q9HDC5 661 aaPredicted RBP13.25□□□□□ -0.29
RNF4-216ENST00000511859 SLC9A2Q9UBY0 812 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 DUSP12Q9UNI6 340 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 UBIAD1Q9Y5Z9 338 aa13.25□□□□□ -0.29
RNF4-216ENST00000511859 CXCL14O95715 111 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 WEE2P0C1S8 567 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 KIAA0319LQ8IZA0 1049 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 ABI1Q8IZP0 508 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 SIX5Q8N196 739 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 LRRC43Q8N309 656 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 CYP2W1Q8TAV3 490 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 TRAPPC12Q8WVT3 735 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 RUBCNQ92622 972 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 HINFPQ9BQA5 517 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 CDHR5Q9HBB8 845 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 JADE2Q9NQC1 790 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 IGSF9Q9P2J2 1179 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 WNT16Q9UBV4 365 aa13.24□□□□□ -0.29
RNF4-216ENST00000511859 CFAP47Q6ZTR5 3102 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 ERICH2A1L162 156 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 STK25O00506 426 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 HBP1O60381 514 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 SDHBP21912 280 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 CRYBB1P53674 252 aaPredicted RBP13.23□□□□□ -0.29
RNF4-216ENST00000511859 TROAPQ12815 778 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 TRDNQ13061 729 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 CWC27Q6UX04 472 aaKnown RBP13.23□□□□□ -0.29
RNF4-216ENST00000511859 SLC39A11Q8N1S5 342 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 C12orf76Q8N812 135 aaPredicted RBP13.23□□□□□ -0.29
RNF4-216ENST00000511859 TMEM40Q8WWA1 233 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 KCNK12Q9HB15 430 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 PKD2L1Q9P0L9 805 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 IRAK3Q9Y616 596 aa13.23□□□□□ -0.29
RNF4-216ENST00000511859 CARNS1A5YM72 827 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 ZSCAN20P17040 1043 aaPredicted RBP13.22□□□□□ -0.29
RNF4-216ENST00000511859 SMARCA1P28370 1054 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 ALDH7A1P49419 539 aaKnown RBP13.22□□□□□ -0.29
RNF4-216ENST00000511859 DSC3Q14574 896 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 CYB5R4Q7L1T6 521 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 RRP36Q96EU6 259 aaKnown RBP13.22□□□□□ -0.29
RNF4-216ENST00000511859 BORCS6Q96GS4 357 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 SDF4Q9BRK5 362 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 PSTPIP2Q9H939 334 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 GPR179Q6PRD1 2367 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 ZFHX4Q86UP3 3567 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 MAP1BP46821 2468 aaKnown RBP13.22□□□□□ -0.29
RNF4-216ENST00000511859 MYH9P35579 1960 aaKnown RBP13.22□□□□□ -0.29
RNF4-216ENST00000511859 DENND4AQ7Z401 1863 aa13.22□□□□□ -0.29
RNF4-216ENST00000511859 NFASCO94856 1347 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 HIP1O00291 1037 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 IFIT3O14879 490 aaKnown RBP13.21□□□□□ -0.29
RNF4-216ENST00000511859 ATG7O95352 703 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 ARP10275 920 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 CA8P35219 290 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 PBX3P40426 434 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 ACTR2P61160 394 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 TBC1D8BQ0IIM8 1120 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 CCDC149Q6ZUS6 474 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 GPR149Q86SP6 731 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 CABP7Q86V35 215 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 FAM228AQ86W67 206 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 PPFIBP1Q86W92 1011 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 PIBF1Q8WXW3 757 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 TMEM169Q96HH4 297 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 SPZ1Q9BXG8 430 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 KCNH7Q9NS40 1196 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 RNF19AQ9NV58 838 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 SEC63Q9UGP8 760 aaKnown RBP13.21□□□□□ -0.29
RNF4-216ENST00000511859 R4GN57 208 aa13.21□□□□□ -0.29
RNF4-216ENST00000511859 COL1A2P08123 1366 aa13.21□□□□□ -0.3
RNF4-216ENST00000511859 SPDYE3A6NKU9 549 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 POLGP54098 1239 aaPredicted RBP13.2□□□□□ -0.3
RNF4-216ENST00000511859 SART3Q15020 963 aaKnown RBP13.2□□□□□ -0.3
RNF4-216ENST00000511859 NONOQ15233 471 aaKnown RBP eCLIP13.2□□□□□ -0.36e-7■■■□□ 19.2
RNF4-216ENST00000511859 ZNF484Q5JVG2 852 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 KANK3Q6NY19 840 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 TMC5Q6UXY8 1006 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 CATIPQ7Z7H3 387 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 VPS52Q8N1B4 723 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 ZNF710Q8N1W2 664 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 SLC22A17Q8WUG5 538 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 MAP3K14Q99558 947 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 OSMRQ99650 979 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 DIAPH3Q9NSV4 1193 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 CHD6Q8TD26 2715 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 IGKV6D-21A0A0A0MT36 114 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.2□□□□□ -0.3
RNF4-216ENST00000511859 CTSAP10619 480 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 EPCAMP16422 314 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms