RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 COL4A3BPQ9Y5P4 624 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 SYNRGQ9UMZ2 1314 aa14.03□□□□□ -0.16
VPS52-220ENST00000493674 CENPFP49454 3210 aa14.02□□□□□ -0.16
VPS52-220ENST00000493674 COL1A2P08123 1366 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 USO1O60763 962 aaKnown RBP14.02□□□□□ -0.17
VPS52-220ENST00000493674 HIP1RO75146 1068 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 TBCAO75347 108 aaKnown RBP14.02□□□□□ -0.17
VPS52-220ENST00000493674 PPP1R37O75864 691 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 DGAT1O75907 488 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 MAPTP10636 758 aaKnown RBP14.02□□□□□ -0.17
VPS52-220ENST00000493674 AKR1A1P14550 325 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 RTP1P59025 263 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 TLK2Q86UE8 772 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 GLIS3Q8NEA6 775 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 MCPH1Q8NEM0 835 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 PXYLP1Q8TE99 480 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 KCNN1Q92952 543 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 CEP170P1Q96L14 293 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 STRA6Q9BX79 667 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 UPF3AQ9H1J1 476 aaKnown RBP14.02□□□□□ -0.17
VPS52-220ENST00000493674 PARVGQ9HBI0 331 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 SLC39A2Q9NP94 309 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 NRBP2Q9NSY0 501 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 ERAP1Q9NZ08 941 aa14.02□□□□□ -0.17
VPS52-220ENST00000493674 UBE4BO95155 1302 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 IGKV6-21A0A0C4DH24 114 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 SMTNL1A8MU46 457 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 DUSP11O75319 330 aaKnown RBP14.01□□□□□ -0.17
VPS52-220ENST00000493674 FAM13AO94988 1023 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 HMGCRP04035 888 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 ZNF18P17022 549 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 CCNE1P24864 410 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 RFC5P40937 340 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 CACNB2Q08289 660 aaPredicted RBP14.01□□□□□ -0.17
VPS52-220ENST00000493674 TRIM32Q13049 653 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 PAK1Q13153 545 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 ZCWPW2Q504Y3 356 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 HERC4Q5GLZ8 1057 aaPredicted RBP14.01□□□□□ -0.17
VPS52-220ENST00000493674 CENPPQ6IPU0 288 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 TTI2Q6NXR4 508 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 SCFD1Q8WVM8 642 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 NELFBQ8WX92 580 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 GLG1Q92896 1179 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 LENG1Q96BZ8 264 aaPredicted RBP14.01□□□□□ -0.17
VPS52-220ENST00000493674 DRC1Q96MC2 740 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 CCDC43Q96MW1 224 aaKnown RBP14.01□□□□□ -0.17
VPS52-220ENST00000493674 SH2D3AQ9BRG2 576 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 ST6GALNAC4Q9H4F1 302 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 ATP6V0A4Q9HBG4 840 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 CTNND2Q9UQB3 1225 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 TRIM17Q9Y577 477 aa14.01□□□□□ -0.17
VPS52-220ENST00000493674 PDCD11Q14690 1871 aaKnown RBP14□□□□□ -0.17
VPS52-220ENST00000493674 PSMA7O14818 248 aa14□□□□□ -0.17
VPS52-220ENST00000493674 EIF3DO15371 548 aaKnown RBP eCLIP14□□□□□ -0.17
VPS52-220ENST00000493674 SEPT4O43236 478 aa14□□□□□ -0.17
VPS52-220ENST00000493674 ADCY3O60266 1144 aa14□□□□□ -0.17
VPS52-220ENST00000493674 HBP1O60381 514 aa14□□□□□ -0.17
VPS52-220ENST00000493674 MAFO75444 373 aaPredicted RBP14□□□□□ -0.17
VPS52-220ENST00000493674 F2P00734 622 aa14□□□□□ -0.17
VPS52-220ENST00000493674 ELNP15502 786 aa14□□□□□ -0.17
VPS52-220ENST00000493674 HOXD13P35453 343 aa14□□□□□ -0.17
VPS52-220ENST00000493674 CASP5P51878 434 aa14□□□□□ -0.17
VPS52-220ENST00000493674 GJA9P57773 515 aa14□□□□□ -0.17
VPS52-220ENST00000493674 STIM1Q13586 685 aa14□□□□□ -0.17
VPS52-220ENST00000493674 EMC2Q15006 297 aa14□□□□□ -0.17
VPS52-220ENST00000493674 DGKDQ16760 1214 aa14□□□□□ -0.17
VPS52-220ENST00000493674 MTERF2Q49AM1 385 aa14□□□□□ -0.17
VPS52-220ENST00000493674 SPATA1Q5VX52 437 aa14□□□□□ -0.17
VPS52-220ENST00000493674 SARM1Q6SZW1 724 aa14□□□□□ -0.17
VPS52-220ENST00000493674 MYOCDQ8IZQ8 938 aa14□□□□□ -0.17
VPS52-220ENST00000493674 ZNF507Q8TCN5 953 aa14□□□□□ -0.17
VPS52-220ENST00000493674 KIFAP3Q92845 792 aa14□□□□□ -0.17
VPS52-220ENST00000493674 P2RX5Q93086 422 aa14□□□□□ -0.17
VPS52-220ENST00000493674 SEMA6BQ9H3T3 888 aa14□□□□□ -0.17
VPS52-220ENST00000493674 C17orf75Q9HAS0 396 aa14□□□□□ -0.17
VPS52-220ENST00000493674 ZMYM2Q9UBW7 1377 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 CITO14578 2027 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 BECN2A8MW95 431 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 DYNC1LI2O43237 492 aaPredicted RBP13.99□□□□□ -0.17
VPS52-220ENST00000493674 AP5Z1O43299 807 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 ZNF286BP0CG31 522 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 PLS3P13797 630 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 PRKAR2AP13861 404 aaKnown RBP13.99□□□□□ -0.17
VPS52-220ENST00000493674 CPT1AP50416 773 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 PMS1P54277 932 aaKnown RBP13.99□□□□□ -0.17
VPS52-220ENST00000493674 NCKAP1LP55160 1127 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 ZNF484Q5JVG2 852 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 CDKAL1Q5VV42 579 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 KLHL10Q6JEL2 608 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 ZC3H3Q8IXZ2 948 aaKnown RBP13.99□□□□□ -0.17
VPS52-220ENST00000493674 SPIRE2Q8WWL2 714 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 KAT2BQ92831 832 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 DUSP9Q99956 384 aaKnown RBP13.99□□□□□ -0.17
VPS52-220ENST00000493674 KCTD10Q9H3F6 313 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 RNPEPQ9H4A4 650 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 POLD4Q9HCU8 107 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 GPRC5CQ9NQ84 441 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 ZNF215Q9UL58 517 aaPredicted RBP13.99□□□□□ -0.17
VPS52-220ENST00000493674 MAPK8IP1Q9UQF2 711 aa13.99□□□□□ -0.17
VPS52-220ENST00000493674 PTPN22Q9Y2R2 807 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms