RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 ERVK-5Q9HDB9 667 aa23.77■■□□□ 1.4
LIME1-207ENST00000489212 AKT3Q9Y243 479 aa23.77■■□□□ 1.4
LIME1-207ENST00000489212 SPTBN5Q9NRC6 3674 aaKnown RBP23.77■■□□□ 1.39
LIME1-207ENST00000489212 NEMFO60524 1076 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 BAG4O95429 457 aaKnown RBP23.76■■□□□ 1.39
LIME1-207ENST00000489212 P4HBP07237 508 aaKnown RBP23.76■■□□□ 1.39
LIME1-207ENST00000489212 ATP2B1P20020 1258 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 QARSP47897 775 aaKnown RBP23.76■■□□□ 1.39
LIME1-207ENST00000489212 CRYBB1P53674 252 aaPredicted RBP23.76■■□□□ 1.39
LIME1-207ENST00000489212 TBC1D8BQ0IIM8 1120 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 DRP2Q13474 957 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 EPHA7Q15375 998 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 CALCRLQ16602 461 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 TMX3Q96JJ7 454 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 MTMR9Q96QG7 549 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 YME1L1Q96TA2 773 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 FTHL17Q9BXU8 183 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 TMEM60Q9H2L4 133 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 ADAMTS10Q9H324 1103 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 FOXP1Q9H334 677 aaPredicted RBP23.76■■□□□ 1.39
LIME1-207ENST00000489212 RGL1Q9NZL6 768 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 MTUS1Q9ULD2 1270 aa23.76■■□□□ 1.39
LIME1-207ENST00000489212 LPXNO60711 386 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 RPS6KA5O75582 802 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 TMOD1P28289 359 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 NLRP11P59045 1033 aaKnown RBP23.75■■□□□ 1.39
LIME1-207ENST00000489212 ERVK-21P61565 698 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 NFX1Q12986 1120 aaKnown RBP23.75■■□□□ 1.39
LIME1-207ENST00000489212 PLA2G4FQ68DD2 849 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 DYDC2Q96IM9 177 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 ZNF668Q96K58 619 aaPredicted RBP23.75■■□□□ 1.39
LIME1-207ENST00000489212 TGS1Q96RS0 853 aaKnown RBP23.75■■□□□ 1.39
LIME1-207ENST00000489212 MAP7D2Q96T17 732 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 TSPYL2Q9H2G4 693 aaPredicted RBP23.75■■□□□ 1.39
LIME1-207ENST00000489212 ST3GAL5Q9UNP4 418 aa23.75■■□□□ 1.39
LIME1-207ENST00000489212 COL4A4P53420 1690 aaPredicted RBP23.75■■□□□ 1.39
LIME1-207ENST00000489212 IGKV6-21A0A0C4DH24 114 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 MGEA5O60502 916 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 GRB10Q13322 594 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 FAM228AQ86W67 206 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 CRIPAKQ8N1N5 446 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 ZNF579Q8NAF0 562 aaKnown RBP23.74■■□□□ 1.39
LIME1-207ENST00000489212 PPM1EQ8WY54 764 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 LXNQ9BS40 222 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 C17orf80Q9BSJ5 609 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 RC3H2Q9HBD1 1191 aaKnown RBP23.74■■□□□ 1.39
LIME1-207ENST00000489212 PCDHA12Q9UN75 941 aa23.74■■□□□ 1.39
LIME1-207ENST00000489212 COL4A6Q14031 1691 aa23.73■■□□□ 1.39
LIME1-207ENST00000489212 MCM7P33993 719 aa23.73■■□□□ 1.39
LIME1-207ENST00000489212 TXKP42681 527 aa23.73■■□□□ 1.39
LIME1-207ENST00000489212 NPEPPSP55786 919 aa23.73■■□□□ 1.39
LIME1-207ENST00000489212 CTTNQ14247 550 aaKnown RBP23.73■■□□□ 1.39
LIME1-207ENST00000489212 CCDC85BQ15834 202 aaPredicted RBP23.73■■□□□ 1.39
LIME1-207ENST00000489212 IL27Q8NEV9 243 aa23.73■■□□□ 1.39
LIME1-207ENST00000489212 GDPD5Q8WTR4 605 aa23.73■■□□□ 1.39
LIME1-207ENST00000489212 TTC12Q9H892 705 aaPredicted RBP23.73■■□□□ 1.39
LIME1-207ENST00000489212 MTCH2Q9Y6C9 303 aa23.73■■□□□ 1.39
LIME1-207ENST00000489212 MAFO75444 373 aaPredicted RBP23.72■■□□□ 1.39
LIME1-207ENST00000489212 POU3F3P20264 500 aaPredicted RBP23.72■■□□□ 1.39
LIME1-207ENST00000489212 GPC3P51654 580 aa23.72■■□□□ 1.39
LIME1-207ENST00000489212 CYP4A11Q02928 519 aa23.72■■□□□ 1.39
LIME1-207ENST00000489212 NOSTRINQ8IVI9 506 aa23.72■■□□□ 1.39
LIME1-207ENST00000489212 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.72■■□□□ 1.39
LIME1-207ENST00000489212 C4orf19Q8IY42 314 aa23.72■■□□□ 1.39
LIME1-207ENST00000489212 PRDM6Q9NQX0 595 aa23.72■■□□□ 1.39
LIME1-207ENST00000489212 CYP26B1Q9NR63 512 aa23.72■■□□□ 1.39
LIME1-207ENST00000489212 VCANP13611 3396 aa23.72■■□□□ 1.39
LIME1-207ENST00000489212 ZBTB39O15060 712 aa23.71■■□□□ 1.39
LIME1-207ENST00000489212 GPR182O15218 404 aa23.71■■□□□ 1.39
LIME1-207ENST00000489212 DKC1O60832 514 aaKnown RBP eCLIP23.71■■□□□ 1.39
LIME1-207ENST00000489212 SLITRK3O94933 977 aa23.71■■□□□ 1.39
LIME1-207ENST00000489212 ZNF174Q15697 407 aa23.71■■□□□ 1.39
LIME1-207ENST00000489212 ZNF689Q96CS4 500 aaPredicted RBP23.71■■□□□ 1.39
LIME1-207ENST00000489212 HSD17B14Q9BPX1 270 aa23.71■■□□□ 1.39
LIME1-207ENST00000489212 EIF2AK1Q9BQI3 630 aaKnown RBP23.71■■□□□ 1.39
LIME1-207ENST00000489212 BACH2Q9BYV9 841 aa23.71■■□□□ 1.39
LIME1-207ENST00000489212 DGKIO75912 1065 aa23.7■■□□□ 1.38
LIME1-207ENST00000489212 MICALL1Q8N3F8 863 aa23.7■■□□□ 1.38
LIME1-207ENST00000489212 CEP170P1Q96L14 293 aa23.7■■□□□ 1.38
LIME1-207ENST00000489212 ADAM2Q99965 735 aa23.7■■□□□ 1.38
LIME1-207ENST00000489212 ZSWIM4Q9H7M6 989 aa23.7■■□□□ 1.38
LIME1-207ENST00000489212 NLRC5Q86WI3 1866 aa23.7■■□□□ 1.38
LIME1-207ENST00000489212 ADGRA3Q8IWK6 1321 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 POTEMA6NI47 508 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 LINC00271P0C7V0 271 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 EIF4BP23588 611 aaKnown RBP23.69■■□□□ 1.38
LIME1-207ENST00000489212 U2AF2P26368 475 aaKnown RBP eCLIP23.69■■□□□ 1.381e-9■■■■□ 23
LIME1-207ENST00000489212 YWHABP31946 246 aaKnown RBP23.69■■□□□ 1.38
LIME1-207ENST00000489212 MCM2P49736 904 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 GNL2Q13823 731 aaKnown RBP23.69■■□□□ 1.38
LIME1-207ENST00000489212 DSC3Q14574 896 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 NBR1Q14596 966 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 TTC38Q5R3I4 469 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 NPAS4Q8IUM7 802 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 TPH2Q8IWU9 490 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 ZNF710Q8N1W2 664 aa23.69■■□□□ 1.38
LIME1-207ENST00000489212 SUCLA2Q9P2R7 463 aaPredicted RBP23.69■■□□□ 1.38
LIME1-207ENST00000489212 ARID2Q68CP9 1835 aa23.68■■□□□ 1.38
LIME1-207ENST00000489212 GTPBP6O43824 516 aaPredicted RBP23.68■■□□□ 1.38
LIME1-207ENST00000489212 DARSP14868 501 aaKnown RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms