RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ABCF2Q9UG63 623 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 COL2A1P02458 1487 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 PGRMC1O00264 195 aaKnown RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 IRS4O14654 1257 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 ATP9BO43861 1147 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 GNA14O95837 355 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 SLC1A4P43007 532 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 MICU3Q86XE3 530 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 RPUSD2Q8IZ73 545 aaKnown RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 LENG9Q96B70 501 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 ORAI2Q96SN7 254 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 SLC39A2Q9NP94 309 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 ATP6V1C1P21283 382 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 IGHMBP2P38935 993 aaKnown RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 BIRC2Q13490 618 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 QPCTQ16769 361 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 WASHC2DQ5SRD0 308 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 TRMT10CQ7L0Y3 403 aaKnown RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 CNOT6LQ96LI5 555 aaKnown RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 PCDHA8Q9Y5H6 950 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 CAPN7Q9Y6W3 813 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC169A6NNP5 214 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 ASMTLO95671 621 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 HOXD13P35453 343 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 MFSD6Q6ZSS7 791 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 PRELID2Q8N945 189 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 ASAP3Q8TDY4 903 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 CPLX3Q8WVH0 158 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 VPS54Q9P1Q0 977 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 BUB1BO60566 1050 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 NFRKBQ6P4R8 1299 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 FRMD5Q7Z6J6 570 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 TTC16Q8NEE8 873 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 BICD1Q96G01 975 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 LRRC27Q9C0I9 530 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 RNPEPL1Q9HAU8 725 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 IL17RBQ9NRM6 502 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 ARPP21Q9UBL0 812 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 GRIN3BO60391 1043 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 GSTA2P09210 222 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CNGA1P29973 690 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 GUCY1A3Q02108 690 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TAZQ16635 292 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 ANO7Q6IWH7 933 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 GUCA1BQ9UMX6 200 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CNTN6Q9UQ52 1028 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 ZSCAN5CA6NGD5 496 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 DDX3XO00571 662 aaKnown RBP eCLIP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 RPS6KA3P51812 740 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 HDLBPQ00341 1268 aaKnown RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 IFIT5Q13325 482 aaKnown RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CNGA2Q16280 664 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 RRAGBQ5VZM2 374 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TRMT1LQ7Z2T5 733 aaKnown RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 SH2D3CQ8N5H7 860 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 OTUD6BQ8N6M0 293 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 ALG3Q92685 438 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 ALS2CR12Q96Q35 445 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 NUP88Q99567 741 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 SLC26A6Q9BXS9 759 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 GJA3Q9Y6H8 435 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 NEBLO76041 1014 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 MBD4O95243 580 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 MAPK7Q13164 816 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC96Q2M329 555 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CSGALNACT2Q8N6G5 542 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 PPP1R14BQ96C90 147 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CEP95Q96GE4 821 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 FAM89AQ96GI7 184 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TRAPPC9Q96Q05 1148 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 UBN1Q9NPG3 1134 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 ENC1O14682 589 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 SRGAP2O75044 1071 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 LYPLA2O95372 231 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 PLEKP08567 350 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 RAB27AP51159 221 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 MGAT5Q09328 741 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC38Q502W7 563 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 SLC45A4Q5BKX6 768 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 PGM2L1Q6PCE3 622 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 IWS1Q96ST2 819 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 MYLK2Q9H1R3 596 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 GREM2Q9H772 168 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 IGSF9BQ9UPX0 1349 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TRIM49BA6NDI0 452 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 PTCD1O75127 700 aaKnown RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 ALDH2P05091 517 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 PTPN7P35236 360 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 PAFAH1B1P43034 410 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 MAGEA8P43361 318 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 HAS1Q92839 578 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 KIAA1586Q9HCI6 787 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 LRWD1Q9UFC0 647 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 GMEB1Q9Y692 573 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 E7ESA3 106 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 CAMTA2O94983 1202 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 TGDSO95455 350 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 ETV4P43268 484 aa5.81□□□□□ -1.48
SYNE1-220ENST00000471834 KLF1Q13351 362 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-220ENST00000471834 SNCBQ16143 134 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms