RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 ANP32AP39687 249 aaKnown RBP4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 EPS15P42566 896 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 PMS1P54277 932 aaKnown RBP4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 PPP2R5EQ16537 467 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 NBPF9Q3BBW0 867 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 ADCK5Q3MIX3 580 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 BBS9Q3SYG4 887 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 CTR9Q6PD62 1173 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 CHST3Q7LGC8 479 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 ZFPM1Q8IX07 1006 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 AMOTL1Q8IY63 956 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 PIWIL2Q8TC59 973 aaKnown RBP4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 VWCEQ96DN2 955 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 DYNLL2Q96FJ2 89 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 FBXL18Q96ME1 805 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 ZDHHC15Q96MV8 337 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 NEK1Q96PY6 1258 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 MRIQ9BWK5 157 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 EPB41L4AQ9HCS5 686 aaPredicted RBP4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 MYOZ2Q9NPC6 264 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 DCP1AQ9NPI6 582 aaPredicted RBP4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 TMOD2Q9NZR1 351 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 ZNF70Q9UC06 446 aaPredicted RBP4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 ZC3H7BQ9UGR2 993 aaKnown RBP4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 TAF6LQ9Y6J9 622 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 CAPN6Q9Y6Q1 641 aa4.8□□□□□ -1.64
TMEM39A-204ENST00000468545 GAKO14976 1311 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 PRR33A8MZF0 331 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 E7EWF7 191 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 FOXP2O15409 715 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 IGSF3O75054 1194 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 PRDM1O75626 825 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 WDHD1O75717 1129 aaPredicted RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 CBX7O95931 251 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 SLC3A2P08195 630 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 ITIH2P19823 946 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 CASTP20810 708 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 RPS12P25398 132 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 PSMA5P28066 241 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 GTF2F1P35269 517 aaKnown RBP eCLIP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 PLCD1P51178 756 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 CLCN7P51798 805 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 NEK4P51957 841 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 RHBDL3P58872 404 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 PPARAQ07869 468 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 TRDNQ13061 729 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 ALX1Q15699 326 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 IFI16Q16666 785 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 MSMPQ1L6U9 139 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 NBPF12Q5TAG4 269 aaPredicted RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 BLOC1S2Q6QNY1 142 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 MFSD6Q6ZSS7 791 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 ANKS3Q6ZW76 656 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 SPACA3Q8IXA5 215 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 CKAP2LQ8IYA6 745 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 GPC2Q8N158 579 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 PLD6Q8N2A8 252 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 DTWD2Q8NBA8 298 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 NETO1Q8TDF5 533 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 ZNF526Q8TF50 670 aaPredicted RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 DPF2Q92785 391 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 Q96M66 194 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 DRC1Q96MC2 740 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 TCEANC2Q96MN5 208 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 KRTAP4-8Q9BYQ9 185 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 LRRC2Q9BYS8 371 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 UPF3BQ9BZI7 483 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 MKRN2Q9H000 416 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 TNKS2Q9H2K2 1166 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 DDX4Q9NQI0 724 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 ATP8A2Q9NTI2 1148 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 PDRG1Q9NUG6 133 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 ZNF214Q9UL59 606 aaPredicted RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 KCNH3Q9ULD8 1083 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 NAP1L2Q9ULW6 460 aaPredicted RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 R3HCC1Q9Y3T6 440 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 CYP46A1Q9Y6A2 500 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 BRCA1P38398 1863 aaKnown RBP4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 FER1L6Q2WGJ9 1857 aa4.79□□□□□ -1.64
TMEM39A-204ENST00000468545 SCN9AQ15858 1988 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 ASTN2O75129 1339 aaPredicted RBP4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 FLT1P17948 1338 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 CCDC88AQ3V6T2 1871 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 FAM155AB1AL88 458 aaPredicted RBP4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 B4E1Z4 1266 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 WNT10BO00744 389 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 KLF4O43474 513 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 EPB41L2O43491 1005 aaKnown RBP4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 RANBP6O60518 1105 aaKnown RBP4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 HLA-DOAP06340 250 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 CD97P48960 835 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 ZNF280AP59817 542 aaPredicted RBP4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 ANAPC15P60006 121 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 TNK2Q07912 1038 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 KRT32Q14532 448 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 RABEP1Q15276 862 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 NKPD1Q17RQ9 610 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 FAM47AQ5JRC9 791 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 AKNAD1Q5T1N1 836 aa4.78□□□□□ -1.64
TMEM39A-204ENST00000468545 C12orf60Q5U649 245 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms