RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 CHD9Q3L8U1 2897 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 ABHD14A-ACY1A0A1B0GW23 586 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 ZBTB39O15060 712 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 SLC26A4O43511 780 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 EFCAB14O75071 495 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 GPR32O75388 356 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 NASPP49321 788 aaPredicted RBP16.04■□□□□ 0.16
COL3A1-203ENST00000450867 RARRES1P49788 294 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 CLCN3P51790 818 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 TCTN1Q2MV58 587 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 FAM173BQ6P4H8 233 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 TSHZ1Q6ZSZ6 1077 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 OTOP2Q7RTS6 562 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 APBB2Q92870 758 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 CEP170P1Q96L14 293 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 NACC1Q96RE7 527 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 MAP7D2Q96T17 732 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 MMTAG2Q9BU76 263 aaKnown RBP16.04■□□□□ 0.16
COL3A1-203ENST00000450867 CXXC1Q9P0U4 656 aaPredicted RBP16.04■□□□□ 0.16
COL3A1-203ENST00000450867 MYH11P35749 1972 aa16.04■□□□□ 0.16
COL3A1-203ENST00000450867 SZT2Q5T011 3432 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 M0QZ92 97 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 F13A1P00488 732 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 FXR1P51114 621 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL3A1-203ENST00000450867 CRYBB1P53674 252 aaPredicted RBP16.03■□□□□ 0.16
COL3A1-203ENST00000450867 SMAD3P84022 425 aaKnown RBP16.03■□□□□ 0.16
COL3A1-203ENST00000450867 CDC42EP1Q00587 391 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 XKR9Q5GH70 373 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 GPR153Q6NV75 609 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 POTEGQ6S5H5 508 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 LRRC71Q8N4P6 559 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 METTL13Q8N6R0 699 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 DBF4BQ8NFT6 615 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 SLC7A3Q8WY07 619 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 SEPT8Q92599 483 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 USP28Q96RU2 1077 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 SH2D3AQ9BRG2 576 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 IFIH1Q9BYX4 1025 aaKnown RBP16.03■□□□□ 0.16
COL3A1-203ENST00000450867 FTOQ9C0B1 505 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL3A1-203ENST00000450867 ADAMTS10Q9H324 1103 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 CLIC4Q9Y696 253 aa16.03■□□□□ 0.16
COL3A1-203ENST00000450867 VWA3AA6NCI4 1184 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 SOX1O00570 391 aaPredicted RBP16.02■□□□□ 0.16
COL3A1-203ENST00000450867 DGAT1O75907 488 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 VTNP04004 478 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 GHRP10912 638 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 LONP1P36776 959 aaKnown RBP16.02■□□□□ 0.16
COL3A1-203ENST00000450867 CCT6AP40227 531 aaKnown RBP16.02■□□□□ 0.16
COL3A1-203ENST00000450867 DNM2P50570 870 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 GPC3P51654 580 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 POLGP54098 1239 aaPredicted RBP16.02■□□□□ 0.16
COL3A1-203ENST00000450867 TMEM62Q0P6H9 643 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 DRP2Q13474 957 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 PKP1Q13835 747 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 IKBKEQ14164 716 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 EMC2Q15006 297 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 SLC39A14Q15043 492 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 ECM1Q16610 540 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 KRT79Q5XKE5 535 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 SPRYD3Q8NCJ5 442 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 PHOSPHO2Q8TCD6 241 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 SNX29Q8TEQ0 813 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 PIGOQ8TEQ8 1089 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 AGO3Q9H9G7 860 aaKnown RBP16.02■□□□□ 0.16
COL3A1-203ENST00000450867 CDHR5Q9HBB8 845 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 XPNPEP1Q9NQW7 623 aa16.02■□□□□ 0.16
COL3A1-203ENST00000450867 COL4A6Q14031 1691 aa16.02■□□□□ 0.15
COL3A1-203ENST00000450867 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.01■□□□□ 0.15
COL3A1-203ENST00000450867 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.01■□□□□ 0.15
COL3A1-203ENST00000450867 PP2D1A8MPX8 630 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 BRD1O95696 1058 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 WDR5P61964 334 aaKnown RBP16.01■□□□□ 0.15
COL3A1-203ENST00000450867 ATL3Q6DD88 541 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 ZNF410Q86VK4 478 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 TMEM40Q8WWA1 233 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 SLC9A7Q96T83 725 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 SUGCTQ9HAC7 445 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 FBXO2Q9UK22 296 aaPredicted RBP16.01■□□□□ 0.15
COL3A1-203ENST00000450867 AKT3Q9Y243 479 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 SRPRBQ9Y5M8 271 aaKnown RBP16.01■□□□□ 0.15
COL3A1-203ENST00000450867 SLC4A7Q9Y6M7 1214 aa16.01■□□□□ 0.15
COL3A1-203ENST00000450867 DDIT3P35638 169 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 NLRP11P59045 1033 aaKnown RBP16■□□□□ 0.15
COL3A1-203ENST00000450867 KIZQ2M2Z5 673 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 FAM109BQ6ICB4 259 aaPredicted RBP16■□□□□ 0.15
COL3A1-203ENST00000450867 LINC00301Q8NCQ3 95 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 TCP11Q8WWU5 503 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 ZNF396Q96N95 335 aaPredicted RBP16■□□□□ 0.15
COL3A1-203ENST00000450867 ATP6V0A4Q9HBG4 840 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 SUCLA2Q9P2R7 463 aaPredicted RBP16■□□□□ 0.15
COL3A1-203ENST00000450867 PADI3Q9ULW8 664 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 KIAA1024Q9UPX6 916 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 ZDHHC9Q9Y397 364 aa16■□□□□ 0.15
COL3A1-203ENST00000450867 TRANK1O15050 2925 aa15.99■□□□□ 0.15
COL3A1-203ENST00000450867 ASAP2O43150 1006 aa15.99■□□□□ 0.15
COL3A1-203ENST00000450867 YEATS4O95619 227 aa15.99■□□□□ 0.15
COL3A1-203ENST00000450867 EYA4O95677 639 aa15.99■□□□□ 0.15
COL3A1-203ENST00000450867 DARSP14868 501 aaKnown RBP15.99■□□□□ 0.15
COL3A1-203ENST00000450867 EIF4BP23588 611 aaKnown RBP15.99■□□□□ 0.15
COL3A1-203ENST00000450867 CDC25AP30304 524 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms