RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PAFAH1B1P43034 410 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 PLS1Q14651 629 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 TCERG1LQ5VWI1 586 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 FAM160B2Q86V87 743 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 GOLGA6L1Q8N7Z2 621 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 ZC3H15Q8WU90 426 aaKnown RBP11.69□□□□□ -0.54
CUX1-205ENST00000425244 ATG4CQ96DT6 458 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 BHMT2Q9H2M3 363 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 BCAS3Q9H6U6 928 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 YY1AP1Q9H869 796 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 FAM204AQ9H8W3 233 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 NMRK2Q9NPI5 230 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 TMOD4Q9NZQ9 345 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 ADAMTS1Q9UHI8 967 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 DMGDHQ9UI17 866 aaKnown RBP11.69□□□□□ -0.54
CUX1-205ENST00000425244 IRF6O14896 467 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 CHMP2AO43633 222 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 PALMO75781 387 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 HOXA7P31268 230 aaPredicted RBP11.69□□□□□ -0.54
CUX1-205ENST00000425244 RNASE9P60153 205 aaKnown RBP11.69□□□□□ -0.54
CUX1-205ENST00000425244 SPIRE1Q08AE8 756 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 GIT2Q14161 759 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 ASIC2Q16515 512 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 GADL1Q6ZQY3 521 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 SND1Q7KZF4 910 aaKnown RBP eCLIP11.69□□□□□ -0.54
CUX1-205ENST00000425244 TLR10Q9BXR5 811 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 PACSIN1Q9BY11 444 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 NUCKS1Q9H1E3 243 aaKnown RBP11.69□□□□□ -0.54
CUX1-205ENST00000425244 RANBP17Q9H2T7 1088 aaKnown RBP11.69□□□□□ -0.54
CUX1-205ENST00000425244 MED4Q9NPJ6 270 aa11.69□□□□□ -0.54
CUX1-205ENST00000425244 A0A087X0T9 212 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 OPLAHO14841 1288 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 FAM228BP0C875 321 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 SPATA31C1P0DKV0 1188 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 KIAA0753Q2KHM9 967 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 KLHDC7AQ5VTJ3 777 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 SPAG5Q96R06 1193 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 WDR18Q9BV38 432 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 LUC7LQ9NQ29 371 aaKnown RBP11.68□□□□□ -0.54
CUX1-205ENST00000425244 RGL1Q9NZL6 768 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 ARMCX3Q9UH62 379 aaPredicted RBP11.68□□□□□ -0.54
CUX1-205ENST00000425244 PACSIN2Q9UNF0 486 aaPredicted RBP11.68□□□□□ -0.54
CUX1-205ENST00000425244 AFG3L2Q9Y4W6 797 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 SFI1A8K8P3 1242 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 MSH4O15457 936 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 PJA2O43164 708 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 TBCAO75347 108 aaKnown RBP11.68□□□□□ -0.54
CUX1-205ENST00000425244 SLC9A1P19634 815 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 GGCXP38435 758 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 PTPROQ16827 1216 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 TREML2Q5T2D2 321 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 FOXR2Q6PJQ5 311 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 LEKR1Q6ZMV7 388 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 MMGT1Q8N4V1 131 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 MSL3Q8N5Y2 521 aaKnown RBP11.68□□□□□ -0.54
CUX1-205ENST00000425244 LENG9Q96B70 501 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 MBOAT7Q96N66 472 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 RUSC1Q9BVN2 902 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 RBM12Q9NTZ6 932 aaKnown RBP11.68□□□□□ -0.54
CUX1-205ENST00000425244 FAM184BQ9ULE4 1060 aa11.68□□□□□ -0.54
CUX1-205ENST00000425244 ZC3H4Q9UPT8 1303 aaKnown RBP11.68□□□□□ -0.54
CUX1-205ENST00000425244 TULP2O00295 520 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 CLIC2O15247 247 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 GCNT3O95395 438 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 KLRC1P26715 233 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 RPA1P27694 616 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 KNOP1Q1ED39 458 aaKnown RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 DNAAF5Q86Y56 855 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 ANKRD13AQ8IZ07 590 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 PIGOQ8TEQ8 1089 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 VIPAS39Q9H9C1 493 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 GINM1Q9NU53 330 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 GEMIN8Q9NWZ8 242 aaKnown RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 FRMD3A2A2Y4 597 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 NFIBO00712 420 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 SYF2O95926 243 aaKnown RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 SREBF1P36956 1147 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 CTTNQ14247 550 aaKnown RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 SLC18A3Q16572 532 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 EDRF1Q3B7T1 1238 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 C8orf74Q6P047 294 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 MOXD1Q6UVY6 613 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 PPP4R3CPQ6ZMV5 832 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 SYT2Q8N9I0 419 aaPredicted RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 SYN2Q92777 582 aaPredicted RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 PSD3Q9NYI0 1048 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 PPP1R9AQ9ULJ8 1098 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 GOLGA6BA6NDN3 693 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 DCAF8L1A6NGE4 600 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 EML1O00423 815 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 XRCC5P13010 732 aaKnown RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 PRLRP16471 622 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 HOXD13P35453 343 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 KCNA1Q09470 495 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 Q4G0T1 1027 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 TPH2Q8IWU9 490 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 RNF10Q8N5U6 811 aaKnown RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 CRYGNQ8WXF5 182 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 EIF2AK1Q9BQI3 630 aaKnown RBP11.67□□□□□ -0.54
CUX1-205ENST00000425244 GANQ9H2C0 597 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms