RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TCF3P15923 654 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 HADHAP40939 763 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 MXI1P50539 228 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 GUCY2DQ02846 1103 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 LBRQ14739 615 aaKnown RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 ELF2Q15723 593 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 BTBD8Q5XKL5 378 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 TAB3Q8N5C8 712 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 STKLD1Q8NE28 680 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 EXT2Q93063 718 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 CAPN7Q9Y6W3 813 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 ZC3H4Q9UPT8 1303 aaKnown RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 MICAL3Q7RTP6 2002 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 SERPING1P05155 500 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 USP17L8P0C7I0 530 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 GFAPP14136 432 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 PFKFB1P16118 471 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 CMA1P23946 247 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 EIF3BP55884 814 aaKnown RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 OCA2Q04671 838 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 EEPD1Q7L9B9 569 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 TEX9Q8N6V9 391 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 PIP4K2CQ8TBX8 421 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 RBM41Q96IZ5 413 aaKnown RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 NDE1Q9NXR1 346 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 SNX5Q9Y5X3 404 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 CD58P19256 250 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 GPC3P51654 580 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 NCKAP1LP55160 1127 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 HDAC4P56524 1084 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 TJAP1Q5JTD0 557 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 PKN3Q6P5Z2 889 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 FOXP4Q8IVH2 680 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 MASTLQ96GX5 879 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 NDFIP2Q9NV92 336 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 ARHGAP26Q9UNA1 814 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 KRT7P08729 469 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 DDIT3P35638 169 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 CDO1Q16878 200 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 USP17L2Q6R6M4 530 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 TMEM179Q6ZVK1 233 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 MAML1Q92585 1016 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 COA1Q9GZY4 146 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 NPC1L1Q9UHC9 1359 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 PODXLO00592 558 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 DCTN3O75935 186 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 GUCA1CO95843 209 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 ALS2CLQ60I27 953 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 MB21D1Q8N884 522 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 G3BP2Q9UN86 482 aaKnown RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 MTMR1Q13613 665 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 SNX17Q15036 470 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 SYTL3Q4VX76 610 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 APPL2Q8NEU8 664 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 SCFD1Q8WVM8 642 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 DACH2Q96NX9 599 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 DDX56Q9NY93 547 aaKnown RBP7.32□□□□□ -1.24
SCN1A-204ENST00000423058 MYOM2P54296 1465 aa7.32□□□□□ -1.24
SCN1A-204ENST00000423058 PDE8BO95263 885 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 CAV1Q03135 178 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SF3A3Q12874 501 aaKnown RBP eCLIP7.31□□□□□ -1.242e-17■■■■■ 37.8
SCN1A-204ENST00000423058 C6orf118Q5T5N4 469 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 WDR75Q8IWA0 830 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 DBNDD1Q9H9R9 158 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PCDHA5Q9Y5H7 936 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 FAM47E-STBD1D6RA91 191 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PIK3R2O00459 728 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SERPINI2O75830 405 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 KRT16P08779 473 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SLC9A1P19634 815 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PRAMEP78395 509 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 DPYDQ12882 1025 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PDCLQ13371 301 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 KLHDC4Q8TBB5 520 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 BTN2A2Q8WVV5 523 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 XPO4Q9C0E2 1151 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SARS2Q9NP81 518 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 MAN1C1Q9NR34 630 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 AAASQ9NRG9 546 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SHANK2Q9UPX8 1470 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 RNF123Q5XPI4 1314 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 MAFGO15525 162 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 HNRNPRO43390 633 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 PPP6R2O75170 966 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ATP1A2P50993 1020 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 COPB1P53618 953 aaKnown RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 LRRC63Q05C16 580 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 EFTUD2Q15029 972 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF568Q3ZCX4 644 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF658Q5TYW1 1059 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SCARA5Q6ZMJ2 495 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 RHOT2Q8IXI1 618 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 FMO2Q99518 471 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 ANLNQ9NQW6 1124 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 MPP6Q9NZW5 540 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 TRPA1O75762 1119 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 SKIP12755 728 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 GCKP35557 465 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 CYP4F22Q6NT55 531 aa7.31□□□□□ -1.24
SCN1A-204ENST00000423058 TEX2Q8IWB9 1127 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms