RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 XKR3Q5GH77 459 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 SMYD4Q8IYR2 804 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-206ENST00000421141 SKA2Q8WVK7 121 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-206ENST00000421141 KRT12Q99456 494 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 RHOXF2Q9BQY4 288 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 SAMD15Q9P1V8 674 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 HPCAL4Q9UM19 191 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 SEPT1Q8WYJ6 367 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 EPSTI1Q96J88 318 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 MAN1B1Q9UKM7 699 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 GOLGA8IPA6NC78 632 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 GOLGA8JA6NMD2 632 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 WNT10BO00744 389 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 KPNA6O60684 536 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 KCTD6Q8NC69 237 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 KIF12Q96FN5 646 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 PAGE5Q96GU1 130 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 THAP9Q9H5L6 903 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 NKIRAS1Q9NYS0 192 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 C17orf102A2RUQ5 167 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 RPS6KA5O75582 802 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 SRBD1Q8N5C6 995 aaKnown RBP11.6□□□□□ -0.55
PTCH1-206ENST00000421141 RNF149Q8NC42 400 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 ZNF560Q96MR9 790 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 POLR3GO15318 223 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-206ENST00000421141 RASA1P20936 1047 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 LMNB2Q03252 620 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 ERCC6LQ2NKX8 1250 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 CACYBPQ9HB71 228 aaKnown RBP11.6□□□□□ -0.55
PTCH1-206ENST00000421141 PCDHA5Q9Y5H7 936 aa11.6□□□□□ -0.55
PTCH1-206ENST00000421141 MYH11P35749 1972 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 SLC16A4O15374 487 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 NBPF12Q5TAG4 269 aaPredicted RBP11.59□□□□□ -0.55
PTCH1-206ENST00000421141 EHD4Q9H223 541 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 SLC38A7Q9NVC3 462 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 PSMC4P43686 418 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 DUOXA2Q1HG44 320 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 FAM213AQ9BRX8 229 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 ZKSCAN5Q9Y2L8 839 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 PDHXO00330 501 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 PRPSAP2O60256 369 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 DGAT1O75907 488 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 NNMTP40261 264 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 PPP2R5CQ13362 524 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 CPB1P15086 417 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 RECQLP46063 649 aaPredicted RBP11.59□□□□□ -0.55
PTCH1-206ENST00000421141 CUL4AQ13619 759 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 ZNF653Q96CK0 615 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 TLDC2A0PJX2 215 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 UPP2O95045 317 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 RUNDC3BQ96NL0 473 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 FAM107BQ9H098 131 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 RCOR1Q9UKL0 485 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 HBP1O60381 514 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 RFC5P40937 340 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 EPHA7Q15375 998 aa11.59□□□□□ -0.55
PTCH1-206ENST00000421141 RNF187Q5TA31 235 aaPredicted RBP11.59□□□□□ -0.55
PTCH1-206ENST00000421141 SYNGAP1Q96PV0 1343 aa11.58□□□□□ -0.55
PTCH1-206ENST00000421141 H7C0C1 242 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 VCAM1P19320 739 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 CDC27P30260 824 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 ATP5OP48047 213 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 AP3M2P53677 418 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 KRT17Q04695 432 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 TSGA10IPQ3SY00 556 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 CROCCP2Q86T23 111 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 PALM2Q8IXS6 379 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 CCDC110Q8TBZ0 833 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 ATG4CQ96DT6 458 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 TYW1Q9NV66 732 aaKnown RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 RBAKQ9NYW8 714 aaPredicted RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 COL3A1P02461 1466 aaPredicted RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 PEAK1Q9H792 1746 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 KCNK3O14649 394 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 MCF2LO15068 1137 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 ASAP2O43150 1006 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 CTSHP09668 335 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 H2AFZP0C0S5 128 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 H2AFVQ71UI9 128 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 PSMB7Q99436 277 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 GLIS2Q9BZE0 524 aaPredicted RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 EFCC1Q9HA90 598 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 ANAPC4Q9UJX5 808 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 NUP98P52948 1817 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 MYH1P12882 1939 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 NR3C2P08235 984 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 SUPT20HL2P0C7V6 817 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 GLB1LQ6UWU2 654 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 RFX6Q8HWS3 928 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 GPRC5DQ9NZD1 345 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 MKRN1Q9UHC7 482 aaKnown RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 FAM170AA1A519 330 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 GOLGA8SH3BPF8 625 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 ZNF18P17022 549 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 IRX5P78411 483 aaPredicted RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 BZW1Q7L1Q6 419 aaKnown RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 KCND2Q9NZV8 630 aa11.58□□□□□ -0.56
PTCH1-206ENST00000421141 MYH9P35579 1960 aaKnown RBP11.58□□□□□ -0.56
PTCH1-206ENST00000421141 TADA2BQ86TJ2 420 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms