RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TMC3Q7Z5M5 1100 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 GIMAP8Q8ND71 665 aaPredicted RBP10.01□□□□□ -0.81
COL28A1-201ENST00000399429 STK32AQ8WU08 396 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 SEMA4AQ9H3S1 761 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 DCLRE1BQ9H816 532 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 RXFP1Q9HBX9 757 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 SUPT3HO75486 399 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 SMNDC1O75940 238 aaKnown RBP eCLIP10.01□□□□□ -0.81
COL28A1-201ENST00000399429 RHOBTB3O94955 611 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 ATF3P18847 181 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 CYP2J2P51589 502 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 BTKQ06187 659 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 KCNH2Q12809 1159 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 TRIM55Q9BYV6 548 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 RNPEPL1Q9HAU8 725 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 PPARGC1AQ9UBK2 798 aaKnown RBP10.01□□□□□ -0.81
COL28A1-201ENST00000399429 COL15A1P39059 1388 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 A0A1W2PQJ5 194 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 SNAP23O00161 211 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 RNF8O76064 485 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ACADSP16219 412 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 EPHB2P29323 1055 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 KCNJ1P48048 391 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 SCNN1BP51168 640 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 EPHB1P54762 984 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 IRX4P78413 519 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 GRIK3Q13003 919 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 MKRN3Q13064 507 aaKnown RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 MED21Q13503 144 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 RGS9BPQ6ZS82 235 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 TMTC3Q6ZXV5 915 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ATG9AQ7Z3C6 839 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 JAMLQ86YT9 394 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 AK8Q96MA6 479 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ZMAT2Q96NC0 199 aaKnown RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 MED15Q96RN5 788 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 TRAF3IP3Q9Y228 551 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 SH3BP1Q9Y3L3 701 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 PLEKHG1Q9ULL1 1385 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 SNX3O60493 162 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ENTPD5O75356 428 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ZNF189O75820 626 aaPredicted RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 CIAO1O76071 339 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 BCRP11274 1271 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ACTN1P12814 892 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 MEA1Q16626 185 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 KYNUQ16719 465 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 GLYCTKQ8IVS8 523 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 APLFQ8IW19 511 aaPredicted RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 ARL10Q8N8L6 244 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 RBBP8NLQ8NC74 664 aaPredicted RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 CLMNQ96JQ2 1002 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 GREM2Q9H772 168 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ZNF148Q9UQR1 794 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 METP08581 1390 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 FAM187AA6NFU0 413 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 EXOC3O60645 756 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 ETS2P15036 469 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 CPA2P48052 419 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 PTDSS1P48651 473 aaKnown RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 PEX5P50542 639 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 RAB27AP51159 221 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 NCALDP61601 193 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 AP2B1P63010 937 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 THOC5Q13769 683 aaKnown RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 NTRK3Q16288 839 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 MDH1BQ5I0G3 518 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 PPP1R15BQ5SWA1 713 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 KAZNQ674X7 775 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 TTI2Q6NXR4 508 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 PALM2Q8IXS6 379 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 JDP2Q8WYK2 163 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 CCDC124Q96CT7 223 aaKnown RBP10□□□□□ -0.81
COL28A1-201ENST00000399429 DCAF5Q96JK2 942 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 TUBB6Q9BUF5 446 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 PCDHA12Q9UN75 941 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 KIAA1024Q9UPX6 916 aa10□□□□□ -0.81
COL28A1-201ENST00000399429 FAM237AA0A1B0GTK4 181 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 HSPA6P17066 643 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 LACTB2Q53H82 288 aaPredicted RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 C4orf33Q8N1A6 199 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 TRIML2Q8N7C3 387 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 EMILIN3Q9NT22 766 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 GALNT8Q9NY28 637 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 LRCH1Q9Y2L9 728 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 SPDYE5A6NIY4 337 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 SRRM3A6NNA2 597 aaPredicted RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 FESP07332 822 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 EARS2Q5JPH6 523 aaKnown RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 TRIM42Q8IWZ5 723 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 MREGQ8N565 214 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 ENAHQ8N8S7 591 aaPredicted RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 SLC26A7Q8TE54 656 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 TBCKQ8TEA7 893 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 GRK7Q8WTQ7 553 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 SCG3Q8WXD2 468 aaKnown RBP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 C9orf72Q96LT7 481 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.99□□□□□ -0.81
COL28A1-201ENST00000399429 PITPNM2Q9BZ72 1349 aa9.99□□□□□ -0.81
COL28A1-201ENST00000399429 TET3O43151 1660 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms