RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 G3BP2Q9UN86 482 aaKnown RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 H3BQF6 201 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 PDE2AO00408 941 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 LMAN1P49257 510 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 ITIH3Q06033 890 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 C10orf76Q5T2E6 689 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 NFRKBQ6P4R8 1299 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 HS2ST1Q7LGA3 356 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 TRIM74Q86UV6 250 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 TRIM73Q86UV7 250 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 CYP2W1Q8TAV3 490 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 PIGOQ8TEQ8 1089 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 DYDC2Q96IM9 177 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 VPS33BQ9H267 617 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 VIPAS39Q9H9C1 493 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 PLCB1Q9NQ66 1216 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 AIPL1Q9NZN9 384 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 ADAM21Q9UKJ8 722 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 PCDHB13Q9Y5F0 798 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 RBAK-RBAKDNI3L0D1 243 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 SLC16A3O15427 465 aaKnown RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 PAX3P23760 479 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 JAG1P78504 1218 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 FOXR1Q6PIV2 292 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 CPXCR1Q8N123 301 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 SPATA4Q8NEY3 305 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 COG1Q8WTW3 980 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 TATDN2Q93075 761 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 RUSC1Q9BVN2 902 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 ZNF341Q9BYN7 854 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 ADAMTS1Q9UHI8 967 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 COL2A1P02458 1487 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 RSPH10B2B2RC85 870 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 WNT10BO00744 389 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 CLIC2O15247 247 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 ZMYND10O75800 440 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 RSPH10BP0C881 870 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 CXCR5P32302 372 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 PRELPP51888 382 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 SNX1Q13596 522 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 RINT1Q6NUQ1 792 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 CREG2Q8IUH2 290 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 RUBCNQ92622 972 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 NACC1Q96RE7 527 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 PARVGQ9HBI0 331 aa10.52□□□□□ -0.72
COL6A3-204ENST00000392003 EML1O00423 815 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 TLR2O60603 784 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 KCNA3P22001 575 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 DNA2P51530 1060 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 UBXN2AP68543 259 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 RRP1BQ14684 758 aaKnown RBP10.52□□□□□ -0.73
COL6A3-204ENST00000392003 NAB2Q15742 525 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 EPM2AIP1Q7L775 607 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-204ENST00000392003 ZNF577Q9BSK1 485 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 TEKT3Q9BXF9 490 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 GANQ9H2C0 597 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 VCPKMTQ9H867 229 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 OLFML3Q9NRN5 406 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-204ENST00000392003 SEL1LQ9UBV2 794 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 SIPA1L1O43166 1804 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 SFI1A8K8P3 1242 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 OPLAHO14841 1288 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 EIF3DO15371 548 aaKnown RBP eCLIP10.52□□□□□ -0.73
COL6A3-204ENST00000392003 NCK2O43639 380 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 SLC9A1P19634 815 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 PSMC2P35998 433 aaKnown RBP10.52□□□□□ -0.73
COL6A3-204ENST00000392003 BMT2Q1RMZ1 405 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 CEP55Q53EZ4 464 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 C8orf74Q6P047 294 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 CCNI2Q6ZMN8 369 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-204ENST00000392003 CDAN1Q8IWY9 1227 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 FAM178BQ8IXR5 827 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 GMLQ99445 158 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 POLD4Q9HCU8 107 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 FAN1Q9Y2M0 1017 aa10.52□□□□□ -0.73
COL6A3-204ENST00000392003 SCN9AQ15858 1988 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 A0A087X0T9 212 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 ARHGEF35A5YM69 484 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 KIF3CO14782 793 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 PHACTR2O75167 634 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 PALMO75781 387 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 FLOT1O75955 427 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 FAM228BP0C875 321 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 ACTN1P12814 892 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 UCHL3P15374 230 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 MUTP22033 750 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 KLHDC7AQ5VTJ3 777 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 LEKR1Q6ZMV7 388 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 OTOP1Q7RTM1 612 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 SAMD7Q7Z3H4 446 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 FAM83AQ86UY5 434 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 MICALL2Q8IY33 904 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 FAM186BQ8IYM0 893 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 FEM1BQ9UK73 627 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 FRMD4BQ9Y2L6 1034 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 IGLV3-22A0A075B6J6 115 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 SHTN1A0MZ66 631 aa10.51□□□□□ -0.73
COL6A3-204ENST00000392003 LRRIQ3A6PVS8 624 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-204ENST00000392003 AKAP3O75969 853 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms