RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SP4Q02446 784 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 DHX8Q14562 1220 aaKnown RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 CT47A1Q5JQC4 288 aaPredicted RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 PDXDC2PQ6P474 469 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 C4orf19Q8IY42 314 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 ZNF710Q8N1W2 664 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 CCDC150Q8NCX0 1101 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 ENOX1Q8TC92 643 aaKnown RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 DIS3LQ8TF46 1054 aaKnown RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 ATP8B4Q8TF62 1192 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 GSDMAQ96QA5 445 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 HSD17B14Q9BPX1 270 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 POLR3CQ9BUI4 534 aaPredicted RBP11.33□□□□□ -0.6
VPS53-202ENST00000389040 ZSWIM4Q9H7M6 989 aa11.33□□□□□ -0.6
VPS53-202ENST00000389040 DDX39AO00148 427 aaKnown RBP11.32□□□□□ -0.6
VPS53-202ENST00000389040 SKILP12757 684 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 HOXC8P31273 242 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 TECP42680 631 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 UBASH3AP57075 661 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 IRX5P78411 483 aaPredicted RBP11.32□□□□□ -0.6
VPS53-202ENST00000389040 CCZ1BP86790 482 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 CCZ1P86791 482 aaPredicted RBP11.32□□□□□ -0.6
VPS53-202ENST00000389040 NBPF20Q3BBV1 942 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 XKR3Q5GH77 459 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 FAM43BQ6ZT52 329 aaPredicted RBP11.32□□□□□ -0.6
VPS53-202ENST00000389040 PCYT2Q99447 389 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 TUFT1Q9NNX1 390 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 GTF2IRD1Q9UHL9 959 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 NFE2L3Q9Y4A8 694 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 IGSF9BQ9UPX0 1349 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 MYH7BA7E2Y1 1941 aa11.32□□□□□ -0.6
VPS53-202ENST00000389040 KIAA0100Q14667 2235 aaKnown RBP11.31□□□□□ -0.6
VPS53-202ENST00000389040 COL1A2P08123 1366 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 GRIN2DO15399 1336 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 POTEB3A0JP26 581 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 ZNF286BP0CG31 522 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 RPA1P27694 616 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 CASP1P29466 404 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 ZNF484Q5JVG2 852 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 UTP14CQ5TAP6 766 aaKnown RBP11.31□□□□□ -0.6
VPS53-202ENST00000389040 POTEBQ6S5H4 581 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 OTUD6AQ7L8S5 288 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 CCDC60Q8IWA6 550 aaPredicted RBP11.31□□□□□ -0.6
VPS53-202ENST00000389040 NIFKQ9BYG3 293 aaKnown RBP11.31□□□□□ -0.6
VPS53-202ENST00000389040 GABBR1Q9UBS5 961 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 LRWD1Q9UFC0 647 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 CHMP2AO43633 222 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 GTPBP6O43824 516 aaPredicted RBP11.31□□□□□ -0.6
VPS53-202ENST00000389040 SORBS3O60504 671 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 CAND2O75155 1236 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 ZNF18P17022 549 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 KRT79Q5XKE5 535 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 NCAPH2Q6IBW4 605 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 PRIMPOLQ96LW4 560 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 EIF2AK1Q9BQI3 630 aaKnown RBP11.31□□□□□ -0.6
VPS53-202ENST00000389040 RNPEPQ9H4A4 650 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 NR2E3Q9Y5X4 410 aa11.31□□□□□ -0.6
VPS53-202ENST00000389040 C17orf102A2RUQ5 167 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 EML1O00423 815 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 MAGEB2O15479 319 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 SLITRK3O94933 977 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 CD4P01730 458 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 OATP04181 439 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 SMIM10L2AP0DMW4 78 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 SMIM10L2BP0DMW5 78 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 SFPQP23246 707 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS53-202ENST00000389040 STAT6P42226 847 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 PLCB4Q15147 1175 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 ARMCX5Q6P1M9 558 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 TAF2Q6P1X5 1199 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 RPAINQ86UA6 219 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 FAM126BQ8IXS8 530 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 STAMQ92783 540 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 GJA10Q969M2 543 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 MED15Q96RN5 788 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 JPH2Q9BR39 696 aaPredicted RBP11.3□□□□□ -0.6
VPS53-202ENST00000389040 NT5C3AQ9H0P0 336 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 ANKEF1Q9NU02 776 aa11.3□□□□□ -0.6
VPS53-202ENST00000389040 KDM3AQ9Y4C1 1321 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 UQCRHLA0A096LP55 91 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 MBLAC1A4D2B0 266 aaPredicted RBP11.29□□□□□ -0.6
VPS53-202ENST00000389040 EVI5O60447 810 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 PARNO95453 639 aaKnown RBP11.29□□□□□ -0.6
VPS53-202ENST00000389040 UQCRHP07919 91 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 CD44P16070 742 aaKnown RBP11.29□□□□□ -0.6
VPS53-202ENST00000389040 CDK11BP21127 795 aaKnown RBP11.29□□□□□ -0.6
VPS53-202ENST00000389040 CDC25AP30304 524 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 UBA7P41226 1012 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 RTP1P59025 263 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 ADAM17P78536 824 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 CDC42EP1Q00587 391 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 PPFIA1Q13136 1202 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 CUL4BQ13620 913 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 KARSQ15046 597 aaKnown RBP11.29□□□□□ -0.6
VPS53-202ENST00000389040 LRRC26Q2I0M4 334 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 VSTM4Q8IW00 320 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 CCDC155Q8N6L0 562 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 NACC1Q96RE7 527 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 MTRQ99707 1265 aa11.29□□□□□ -0.6
VPS53-202ENST00000389040 CCSER1Q9C0I3 900 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms