RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 WDR60Q8WVS4 1066 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 PHKBQ93100 1093 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 APOBEC2Q9Y235 224 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 A0A0A6YYK5 440 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 CCDC189A1A4V9 331 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 FOXO3O43524 673 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ABL2P42684 1182 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 NR2C2P49116 596 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 KPNA1P52294 538 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 MAPRE1Q15691 268 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 KRT71Q3SY84 523 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 DAB2IPQ5VWQ8 1189 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CRELD2Q6UXH1 353 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 FKBP9P1Q75LS8 142 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 YTHDF3Q7Z739 585 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 CRLF3Q8IUI8 442 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CARD9Q9H257 536 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 PANK4Q9NVE7 773 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 COG7P83436 770 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ICE2Q659A1 982 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 APOA5Q6Q788 366 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 MMS22LQ6ZRQ5 1243 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 C6orf229H3BNL8 230 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 TGFB3P10600 412 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CDK16Q00536 496 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 SPATS1Q496A3 300 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CCDC93Q567U6 631 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 RC3H1Q5TC82 1133 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 XAGE2Q96GT9 111 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 KATNAL1Q9BW62 490 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ORC4O43929 436 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 HERC4Q5GLZ8 1057 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 CYFIP1Q7L576 1253 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 SCFD1Q8WVM8 642 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 DHX58Q96C10 678 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 LRGUKQ96M69 825 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 FAM192AQ9GZU8 254 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 HOXC10Q9NYD6 342 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 FAM196AQ6ZSG2 479 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 RAB42Q8N4Z0 105 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 TSPAN17Q96FV3 270 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 TMEM237Q96Q45 408 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 EYA1Q99502 592 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 DIP2BQ9P265 1576 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ECE1P42892 770 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CTNNAL1Q9UBT7 734 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CLASP2O75122 1294 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 OGNP20774 298 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 ADKP55263 362 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 OXCT1P55809 520 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 PDCD7Q8N8D1 485 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 JADE3Q92613 823 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ACAP3Q96P50 834 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 KRCC1Q9NPI7 259 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 PARVAQ9NVD7 372 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 IQSEC2Q5JU85 1478 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 CYP2C8P10632 490 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 TAC1P20366 129 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 STIP1P31948 543 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 SERPINB9P50453 376 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 RPS8P62241 208 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 SATB1Q01826 763 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 INSCQ1MX18 579 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 BTNL9Q6UXG8 535 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 MIGA1Q8NAN2 632 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ST13P5Q8NFI4 369 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 C19orf60Q96EN9 201 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 OLFM1Q99784 485 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ECT2Q9H8V3 914 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 PUF60Q9UHX1 559 aaKnown RBP4.3□□□□□ -1.72
USH2A-201ENST00000307340 APPL1Q9UKG1 709 aa4.3□□□□□ -1.72
USH2A-201ENST00000307340 ITIH2P19823 946 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 PNPLA4P41247 253 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 SCNN1DP51172 638 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 TKFCQ3LXA3 575 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 USPL1Q5W0Q7 1092 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 P2RX5Q93086 422 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 LRRC74AQ0VAA2 488 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 KBTBD12Q3ZCT8 623 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 NLRP9Q7RTR0 991 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 STX19Q8N4C7 294 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 MAGEB16A2A368 324 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 GOLGA8RI6L899 631 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 AGTP01019 485 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 SKP1P63208 163 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CCDC144BQ3MJ40 725 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 DNAJB7Q7Z6W7 309 aaPredicted RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 C2CD5Q86YS7 1000 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 TBC1D19Q8N5T2 526 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ZNF398Q8TD17 642 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ARHGEF2Q92974 986 aaKnown RBP4.29□□□□□ -1.72
USH2A-201ENST00000307340 UBA5Q9GZZ9 404 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 WWP1Q9H0M0 922 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 C10orf88Q9H8K7 445 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CCDC87Q9NVE4 849 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 PPP2R3BQ9Y5P8 575 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 PFDN1O60925 122 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 CCNE1P24864 410 aa4.29□□□□□ -1.72
USH2A-201ENST00000307340 ACADSBP45954 432 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms