RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SART1O43290 800 aaKnown RBP20.4■□□□□ 0.86
CPSF3-201ENST00000238112 TGFB1I1O43294 461 aa20.4■□□□□ 0.86
CPSF3-201ENST00000238112 CTTNQ14247 550 aaKnown RBP20.4■□□□□ 0.86
CPSF3-201ENST00000238112 SLFN11Q7Z7L1 901 aa20.4■□□□□ 0.86
CPSF3-201ENST00000238112 SEPT12Q8IYM1 358 aa20.4■□□□□ 0.86
CPSF3-201ENST00000238112 PIGOQ8TEQ8 1089 aa20.4■□□□□ 0.86
CPSF3-201ENST00000238112 LRRC45Q96CN5 670 aa20.4■□□□□ 0.86
CPSF3-201ENST00000238112 KCNQ5Q9NR82 932 aa20.4■□□□□ 0.86
CPSF3-201ENST00000238112 CYP3A4P08684 503 aa20.39■□□□□ 0.86
CPSF3-201ENST00000238112 NMT1P30419 496 aaKnown RBP20.39■□□□□ 0.85
CPSF3-201ENST00000238112 NPEPPSP55786 919 aa20.39■□□□□ 0.85
CPSF3-201ENST00000238112 LRIG3Q6UXM1 1119 aa20.39■□□□□ 0.85
CPSF3-201ENST00000238112 TPH2Q8IWU9 490 aa20.39■□□□□ 0.85
CPSF3-201ENST00000238112 MRIQ9BWK5 157 aa20.39■□□□□ 0.85
CPSF3-201ENST00000238112 DDX47Q9H0S4 455 aaKnown RBP20.39■□□□□ 0.85
CPSF3-201ENST00000238112 SAMM50Q9Y512 469 aa20.39■□□□□ 0.85
CPSF3-201ENST00000238112 OPLAHO14841 1288 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 EVI5O60447 810 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 ECHS1P30084 290 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 EMC10Q5UCC4 262 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 B4GALNT4Q76KP1 1039 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 BORCS6Q96GS4 357 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 TUFT1Q9NNX1 390 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 STXBP5LQ9Y2K9 1186 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 SIPA1L1O43166 1804 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 UBAP1LF5GYI3 381 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 CHMP2AO43633 222 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 LMNB1P20700 586 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 LSP1P33241 339 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 SOX5P35711 763 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 HSD17B3P37058 310 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 GUCY1A3Q02108 690 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 NT5DC3Q86UY8 548 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 PACS2Q86VP3 889 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 MICALL1Q8N3F8 863 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 RASGEF1CQ8N431 466 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 CCDC26Q8TAB7 109 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 HSD17B14Q9BPX1 270 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 PARVGQ9HBI0 331 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 ZMYM2Q9UBW7 1377 aa20.38■□□□□ 0.85
CPSF3-201ENST00000238112 F8VZ95 297 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 GCOM1H8Y6P7 765 aaPredicted RBP20.37■□□□□ 0.85
CPSF3-201ENST00000238112 PIK3CDO00329 1044 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 MYZAPP0CAP1 466 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 ZBTB48P10074 688 aaPredicted RBP20.37■□□□□ 0.85
CPSF3-201ENST00000238112 GALCP54803 685 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 SLC15A2Q16348 729 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 LRCH2Q5VUJ6 765 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 DDX42Q86XP3 938 aaKnown RBP eCLIP20.37■□□□□ 0.85
CPSF3-201ENST00000238112 STK33Q9BYT3 514 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 CENPHQ9H3R5 247 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 SLITRK6Q9H5Y7 841 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 AMFRQ9UKV5 643 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 IGLV3-22A0A075B6J6 115 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 GH2P01242 217 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 NFIL3Q16649 462 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 ZC2HC1CQ53FD0 456 aaPredicted RBP20.37■□□□□ 0.85
CPSF3-201ENST00000238112 RBM26Q5T8P6 1007 aaKnown RBP20.37■□□□□ 0.85
CPSF3-201ENST00000238112 MEX3CQ5U5Q3 659 aaKnown RBP20.37■□□□□ 0.85
CPSF3-201ENST00000238112 BTNL9Q6UXG8 535 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 STXBP4Q6ZWJ1 553 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 HS2ST1Q7LGA3 356 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 DYDC2Q96IM9 177 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 MKNK1Q9BUB5 465 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 EPN3Q9H201 632 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 TMBIM4Q9HC24 238 aa20.37■□□□□ 0.85
CPSF3-201ENST00000238112 CPP00450 1065 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 CTNNA1P35221 906 aaKnown RBP20.36■□□□□ 0.85
CPSF3-201ENST00000238112 FMO5P49326 533 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 HDLBPQ00341 1268 aaKnown RBP20.36■□□□□ 0.85
CPSF3-201ENST00000238112 STRIP1Q5VSL9 837 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 C1orf186Q6ZWK4 172 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 OTOP1Q7RTM1 612 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 GLYCTKQ8IVS8 523 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 LNX1Q8TBB1 728 aaPredicted RBP20.36■□□□□ 0.85
CPSF3-201ENST00000238112 HES6Q96HZ4 224 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 IKZF4Q9H2S9 585 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 AMACRQ9UHK6 382 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 DNAJC12Q9UKB3 198 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 PRR12Q9ULL5 1215 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 FRMD4BQ9Y2L6 1034 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 SPATA31A6Q5VVP1 1343 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 NPM3O75607 178 aaKnown RBP20.36■□□□□ 0.85
CPSF3-201ENST00000238112 PPP1R37O75864 691 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 SLITRK3O94933 977 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 ITGB3BPQ13352 177 aaPredicted RBP20.36■□□□□ 0.85
CPSF3-201ENST00000238112 DRAP1Q14919 205 aaPredicted RBP20.36■□□□□ 0.85
CPSF3-201ENST00000238112 SPICE1Q8N0Z3 855 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 PROCA1Q8NCQ7 364 aaPredicted RBP20.36■□□□□ 0.85
CPSF3-201ENST00000238112 EFCC1Q9HA90 598 aa20.36■□□□□ 0.85
CPSF3-201ENST00000238112 VGLL3A8MV65 326 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 ERLIN2O94905 339 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 CCDC172P0C7W6 258 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 ITGA4P13612 1032 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 POLD1P28340 1107 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 PDE6BP35913 854 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 MTMR3Q13615 1198 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 FMNL3Q8IVF7 1028 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 ARFGAP2Q8N6H7 521 aa20.35■□□□□ 0.85
CPSF3-201ENST00000238112 SLC30A5Q8TAD4 765 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 328.3 ms