RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeastyeast

Gene ATG38, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG38YLR211C FHL1P39521 936 aa2.4□□□□□ -2.03
ATG38YLR211C YER184CP39961 794 aa2.4□□□□□ -2.03
ATG38YLR211C VAC7P53950 1165 aa2.4□□□□□ -2.03
ATG38YLR211C SLF1Q12034 447 aaKnown RBP2.4□□□□□ -2.03
ATG38YLR211C AEP3Q12089 606 aa2.4□□□□□ -2.03
ATG38YLR211C YOP1Q12402 180 aa2.4□□□□□ -2.03
ATG38YLR211C YOL085CQ99345 113 aa2.4□□□□□ -2.03
ATG38YLR211C RPL12AP0CX53 165 aaKnown RBP2.39□□□□□ -2.03
ATG38YLR211C RPL12BP0CX54 165 aa2.39□□□□□ -2.03
ATG38YLR211C MAS2P11914 482 aa2.39□□□□□ -2.03
ATG38YLR211C TPS2P31688 896 aaKnown RBP2.39□□□□□ -2.03
ATG38YLR211C VMA8P32610 256 aaKnown RBP2.39□□□□□ -2.03
ATG38YLR211C QDR3P38227 689 aa2.39□□□□□ -2.03
ATG38YLR211C GEP4P38812 185 aa2.39□□□□□ -2.03
ATG38YLR211C ZIM17P42844 174 aa2.39□□□□□ -2.03
ATG38YLR211C PRP38Q00723 242 aaPredicted RBP2.39□□□□□ -2.03
ATG38YLR211C TOA1P32773 286 aa2.38□□□□□ -2.03
ATG38YLR211C CYM1P32898 989 aa2.38□□□□□ -2.03
ATG38YLR211C SMP1P38128 452 aa2.38□□□□□ -2.03
ATG38YLR211C CIN2P46670 268 aa2.38□□□□□ -2.03
ATG38YLR211C PIB2P53191 635 aa2.38□□□□□ -2.03
ATG38YLR211C YGR067CP53243 804 aa2.38□□□□□ -2.03
ATG38YLR211C PRP3Q03338 469 aaPredicted RBP2.38□□□□□ -2.03
ATG38YLR211C YLR177WQ06251 628 aa2.38□□□□□ -2.03
ATG38YLR211C NSE1Q07913 336 aa2.38□□□□□ -2.03
ATG38YLR211C HTZ1Q12692 134 aaKnown RBP2.38□□□□□ -2.03
ATG38YLR211C TPK3P05986 398 aa2.37□□□□□ -2.03
ATG38YLR211C STE7P06784 515 aa2.37□□□□□ -2.03
ATG38YLR211C ANP1P32629 500 aa2.37□□□□□ -2.03
ATG38YLR211C WSC4P38739 605 aa2.37□□□□□ -2.03
ATG38YLR211C LSM12P38828 187 aaKnown RBP2.37□□□□□ -2.03
ATG38YLR211C ATM1P40416 690 aa2.37□□□□□ -2.03
ATG38YLR211C AIP1P46680 615 aaKnown RBP2.37□□□□□ -2.03
ATG38YLR211C TRM112P53738 135 aaPredicted RBP2.37□□□□□ -2.03
ATG38YLR211C REX2P54964 269 aaKnown RBP2.37□□□□□ -2.03
ATG38YLR211C YPL107WQ02873 248 aa2.37□□□□□ -2.03
ATG38YLR211C ERO1Q03103 563 aa2.37□□□□□ -2.03
ATG38YLR211C SXM1Q04175 944 aaKnown RBP2.37□□□□□ -2.03
ATG38YLR211C URC2Q04411 772 aa2.37□□□□□ -2.03
ATG38YLR211C MSC3Q05812 728 aa2.37□□□□□ -2.03
ATG38YLR211C ASA1Q06822 443 aa2.37□□□□□ -2.03
ATG38YLR211C PCL9Q12477 304 aa2.37□□□□□ -2.03
ATG38YLR211C RPS18AP0CX55 146 aaKnown RBP2.36□□□□□ -2.03
ATG38YLR211C RPS18BP0CX56 146 aaPredicted RBP2.36□□□□□ -2.03
ATG38YLR211C NRP1P32770 719 aaKnown RBP RIP-Chip data2.36□□□□□ -2.03not detected
ATG38YLR211C YSC83P32792 385 aa2.36□□□□□ -2.03
ATG38YLR211C PXA2P34230 853 aa2.36□□□□□ -2.03
ATG38YLR211C SOL2P37262 315 aa2.36□□□□□ -2.03
ATG38YLR211C CTK3P46963 296 aaPredicted RBP2.36□□□□□ -2.03
ATG38YLR211C YDR115WQ04598 105 aa2.36□□□□□ -2.03
ATG38YLR211C AGA2P32781 87 aa2.35□□□□□ -2.03
ATG38YLR211C ROG1P53118 685 aa2.35□□□□□ -2.03
ATG38YLR211C YGR111WP53265 400 aa2.35□□□□□ -2.03
ATG38YLR211C RMT2Q03305 412 aa2.35□□□□□ -2.03
ATG38YLR211C NOP6Q07623 225 aaKnown RBP2.35□□□□□ -2.03
ATG38YLR211C SFM1Q12314 213 aa2.35□□□□□ -2.03
ATG38YLR211C SMC6Q12749 1114 aa2.35□□□□□ -2.03
ATG38YLR211C RPS19AP07280 144 aaKnown RBP2.34□□□□□ -2.03
ATG38YLR211C RPS19BP07281 144 aaPredicted RBP2.34□□□□□ -2.03
ATG38YLR211C SLM5P25345 492 aaKnown RBP2.34□□□□□ -2.03
ATG38YLR211C IME2P32581 645 aa2.34□□□□□ -2.03
ATG38YLR211C PEX5P35056 612 aa2.34□□□□□ -2.03
ATG38YLR211C SRP72P38688 640 aaKnown RBP2.34□□□□□ -2.03
ATG38YLR211C PEX22P39718 180 aa2.34□□□□□ -2.03
ATG38YLR211C TRF5P48561 642 aaKnown RBP2.34□□□□□ -2.03
ATG38YLR211C MEH1Q02205 184 aa2.34□□□□□ -2.03
ATG38YLR211C YPR195CQ06594 109 aa2.34□□□□□ -2.03
ATG38YLR211C ARF1P11076 181 aaKnown RBP2.33□□□□□ -2.04
ATG38YLR211C PHO91P27514 894 aa2.33□□□□□ -2.04
ATG38YLR211C DOA1P36037 715 aa2.33□□□□□ -2.04
ATG38YLR211C APE4P38821 490 aa2.33□□□□□ -2.04
ATG38YLR211C ASN2P49090 572 aaKnown RBP2.33□□□□□ -2.04
ATG38YLR211C GAT3Q07928 141 aa2.33□□□□□ -2.04
ATG38YLR211C HIF1Q12373 385 aa2.33□□□□□ -2.04
ATG38YLR211C MEX67Q99257 599 aaKnown RBP2.33□□□□□ -2.04
ATG38YLR211C RNA1P11745 407 aaKnown RBP2.32□□□□□ -2.04
ATG38YLR211C MDH1P17505 334 aaKnown RBP RIP-Chip data2.32□□□□□ -2.04not detected
ATG38YLR211C DBF4P32325 704 aa2.32□□□□□ -2.04
ATG38YLR211C VPH1P32563 840 aaKnown RBP2.32□□□□□ -2.04
ATG38YLR211C CPR7P47103 393 aa2.32□□□□□ -2.04
ATG38YLR211C RCF1Q03713 159 aa2.32□□□□□ -2.04
ATG38YLR211C ATP16Q12165 160 aa2.32□□□□□ -2.04
ATG38YLR211C FRT2P39734 528 aa2.31□□□□□ -2.04
ATG38YLR211C SEC27P41811 889 aaKnown RBP2.31□□□□□ -2.04
ATG38YLR211C COQ5P49017 307 aa2.31□□□□□ -2.04
ATG38YLR211C VEL1P53058 206 aa2.31□□□□□ -2.04
ATG38YLR211C RMI1Q02685 241 aa2.31□□□□□ -2.04
ATG38YLR211C NDL1Q06568 189 aa2.31□□□□□ -2.04
ATG38YLR211C SRO7Q12038 1033 aa2.31□□□□□ -2.04
ATG38YLR211C UNG1P12887 359 aa2.3□□□□□ -2.04
ATG38YLR211C RPS0AP32905 252 aaKnown RBP2.3□□□□□ -2.04
ATG38YLR211C RCK2P38623 610 aa2.3□□□□□ -2.04
ATG38YLR211C LRP1P38801 184 aaKnown RBP2.3□□□□□ -2.04
ATG38YLR211C YHR177WP38867 453 aa2.3□□□□□ -2.04
ATG38YLR211C PAC11P40960 533 aa2.3□□□□□ -2.04
ATG38YLR211C BIO3P50277 480 aa2.3□□□□□ -2.04
ATG38YLR211C YML6P51998 286 aa2.3□□□□□ -2.04
ATG38YLR211C YGR016WP53209 190 aa2.3□□□□□ -2.04
ATG38YLR211C HST4P53688 370 aa2.3□□□□□ -2.04
ATG38YLR211C YDR286CQ05530 114 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 187.6 ms