RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 GJA8P48165 433 aa16■□□□□ 0.15
UPF1-211ENST00000600868 RARRES1P49788 294 aa16■□□□□ 0.15
UPF1-211ENST00000600868 SLC12A3P55017 1021 aa16■□□□□ 0.15
UPF1-211ENST00000600868 MCM6Q14566 821 aa16■□□□□ 0.15
UPF1-211ENST00000600868 TARBP2Q15633 366 aaKnown RBP16■□□□□ 0.15
UPF1-211ENST00000600868 KIAA0753Q2KHM9 967 aa16■□□□□ 0.15
UPF1-211ENST00000600868 KANK3Q6NY19 840 aa16■□□□□ 0.15
UPF1-211ENST00000600868 SV2BQ7L1I2 683 aa16■□□□□ 0.15
UPF1-211ENST00000600868 CNNM3Q8NE01 707 aa16■□□□□ 0.15
UPF1-211ENST00000600868 CCDC34Q96HJ3 373 aa16■□□□□ 0.15
UPF1-211ENST00000600868 TMEM106CQ9BVX2 250 aa16■□□□□ 0.15
UPF1-211ENST00000600868 TNMDQ9H2S6 317 aa16■□□□□ 0.15
UPF1-211ENST00000600868 CYP26B1Q9NR63 512 aa16■□□□□ 0.15
UPF1-211ENST00000600868 TRPC6Q9Y210 931 aa16■□□□□ 0.15
UPF1-211ENST00000600868 COL1A2P08123 1366 aa16■□□□□ 0.15
UPF1-211ENST00000600868 ARHGEF35A5YM69 484 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 TMEM150BA6NC51 233 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 TFRCP02786 760 aaKnown RBP15.99■□□□□ 0.15
UPF1-211ENST00000600868 INSRRP14616 1297 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 SKOR2Q2VWA4 1001 aaPredicted RBP15.99■□□□□ 0.15
UPF1-211ENST00000600868 XKR9Q5GH70 373 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 ZNF484Q5JVG2 852 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 PLA2G4FQ68DD2 849 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 TRMT1LQ7Z2T5 733 aaKnown RBP15.99■□□□□ 0.15
UPF1-211ENST00000600868 ANKLE1Q8NAG6 615 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 PAGE5Q96GU1 130 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 CEP170P1Q96L14 293 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 GLT1D1Q96MS3 346 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 CCDC43Q96MW1 224 aaKnown RBP15.99■□□□□ 0.15
UPF1-211ENST00000600868 CEP89Q96ST8 783 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 LRRC27Q9C0I9 530 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 KCND2Q9NZV8 630 aa15.99■□□□□ 0.15
UPF1-211ENST00000600868 A0A1W2PQ45 241 aaPredicted RBP15.98■□□□□ 0.15
UPF1-211ENST00000600868 A0A1W2PQY0 241 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 ZBTB42B2RXF5 422 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 SMIM10L2AP0DMW4 78 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 SMIM10L2BP0DMW5 78 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 NPEPPSP55786 919 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 AMPD3Q01432 767 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 KLHL40Q2TBA0 621 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 MTERF2Q49AM1 385 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 RINT1Q6NUQ1 792 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 SH3RF1Q7Z6J0 888 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 EXOC8Q8IYI6 725 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 MTRQ99707 1265 aa15.98■□□□□ 0.15
UPF1-211ENST00000600868 NRCAMQ92823 1304 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 ARID2Q68CP9 1835 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 RRN3P2A6NIE6 340 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 DGAT1O75907 488 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 SSBP05455 408 aaKnown RBP eCLIP15.97■□□□□ 0.15
UPF1-211ENST00000600868 MYL1P05976 194 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 CYP11B2P19099 503 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 HOXC8P31273 242 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 MNX1P50219 401 aaPredicted RBP15.97■□□□□ 0.15
UPF1-211ENST00000600868 PPFIA1Q13136 1202 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 GRIK4Q16099 956 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 NBPF20Q3BBV1 942 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 CNNM4Q6P4Q7 775 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 NFRKBQ6P4R8 1299 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 PADI6Q6TGC4 694 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 C1orf186Q6ZWK4 172 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 SESTD1Q86VW0 696 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 GPBP1Q86WP2 473 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 C7orf25Q9BPX7 421 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 SH2D3AQ9BRG2 576 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 SEZ6LQ9BYH1 1024 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 DHX33Q9H6R0 707 aaKnown RBP15.97■□□□□ 0.15
UPF1-211ENST00000600868 PDLIM7Q9NR12 457 aa15.97■□□□□ 0.15
UPF1-211ENST00000600868 HOOK1Q9UJC3 728 aaKnown RBP15.97■□□□□ 0.15
UPF1-211ENST00000600868 GRIN2DO15399 1336 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 MYMKA6NI61 221 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 MAGEB2O15479 319 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 RFC5P40937 340 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 AFMP43652 599 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 MDM2Q00987 491 aaPredicted RBP15.96■□□□□ 0.15
UPF1-211ENST00000600868 PTPN11Q06124 597 aaPredicted RBP15.96■□□□□ 0.15
UPF1-211ENST00000600868 TBC1D8BQ0IIM8 1120 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 ITGA7Q13683 1181 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 DHX8Q14562 1220 aaKnown RBP15.96■□□□□ 0.15
UPF1-211ENST00000600868 ARSHQ5FYA8 562 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 C7orf31Q8N865 590 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 SLC43A3Q8NBI5 491 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 VTI1AQ96AJ9 217 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 JPH2Q9BR39 696 aaPredicted RBP15.96■□□□□ 0.15
UPF1-211ENST00000600868 RUSC1Q9BVN2 902 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 TIPINQ9BVW5 301 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 TRIM9Q9C026 710 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 CLSTN2Q9H4D0 955 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 BMP2KQ9NSY1 1161 aaPredicted RBP15.96■□□□□ 0.15
UPF1-211ENST00000600868 HDAC6Q9UBN7 1215 aa15.96■□□□□ 0.15
UPF1-211ENST00000600868 IGKV6-21A0A0C4DH24 114 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 A0A0U1RQG5 324 aaPredicted RBP15.95■□□□□ 0.14
UPF1-211ENST00000600868 MBLAC1A4D2B0 266 aaPredicted RBP15.95■□□□□ 0.14
UPF1-211ENST00000600868 GTPBP6O43824 516 aaPredicted RBP15.95■□□□□ 0.14
UPF1-211ENST00000600868 TRAK2O60296 914 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 MAFO75444 373 aaPredicted RBP15.95■□□□□ 0.14
UPF1-211ENST00000600868 GNAT1P11488 350 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 GUCY2CP25092 1073 aa15.95■□□□□ 0.14
UPF1-211ENST00000600868 POLGP54098 1239 aaPredicted RBP15.95■□□□□ 0.14
UPF1-211ENST00000600868 CHMP4BP1P59074 171 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms