RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PCDHA11Q9Y5I1 949 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 MTCH2Q9Y6C9 303 aa23.11■■□□□ 1.29
VPS53-210ENST00000571456 IGSF9BQ9UPX0 1349 aa23.1■■□□□ 1.29
VPS53-210ENST00000571456 GNAT1P11488 350 aa23.1■■□□□ 1.29
VPS53-210ENST00000571456 NBPF20Q3BBV1 942 aa23.1■■□□□ 1.29
VPS53-210ENST00000571456 CFAP45Q9UL16 551 aa23.1■■□□□ 1.29
VPS53-210ENST00000571456 CHMP2AO43633 222 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 P4HBP07237 508 aaKnown RBP23.09■■□□□ 1.29
VPS53-210ENST00000571456 MYOGP15173 224 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 MUTP22033 750 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 DDIT3P35638 169 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 MRE11P49959 708 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 NBR1Q14596 966 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 SF3A1Q15459 793 aaKnown RBP23.09■■□□□ 1.29
VPS53-210ENST00000571456 HAUS3Q68CZ6 603 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 SWSAP1Q6NVH7 229 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 PDXDC2PQ6P474 469 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 CCDC60Q8IWA6 550 aaPredicted RBP23.09■■□□□ 1.29
VPS53-210ENST00000571456 PCYT2Q99447 389 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 TSHZ2Q9NRE2 1034 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 SLC4A7Q9Y6M7 1214 aa23.09■■□□□ 1.29
VPS53-210ENST00000571456 NRCAMQ92823 1304 aa23.08■■□□□ 1.29
VPS53-210ENST00000571456 SLC26A4O43511 780 aa23.08■■□□□ 1.29
VPS53-210ENST00000571456 RPLP2P05387 115 aaKnown RBP23.08■■□□□ 1.29
VPS53-210ENST00000571456 PSMC5P62195 406 aa23.08■■□□□ 1.29
VPS53-210ENST00000571456 KCTD17Q8N5Z5 321 aa23.08■■□□□ 1.29
VPS53-210ENST00000571456 BBXQ8WY36 941 aaPredicted RBP23.08■■□□□ 1.29
VPS53-210ENST00000571456 AK8Q96MA6 479 aa23.08■■□□□ 1.29
VPS53-210ENST00000571456 UIMC1Q96RL1 719 aa23.08■■□□□ 1.29
VPS53-210ENST00000571456 GABBR1Q9UBS5 961 aa23.08■■□□□ 1.29
VPS53-210ENST00000571456 COL1A2P08123 1366 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 RRN3P2A6NIE6 340 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 PI4K2BG5E9Z4 385 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 HBP1O60381 514 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 YEATS4O95619 227 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 CD4P01730 458 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 QARSP47897 775 aaKnown RBP23.07■■□□□ 1.28
VPS53-210ENST00000571456 NASPP49321 788 aaPredicted RBP23.07■■□□□ 1.28
VPS53-210ENST00000571456 PKP1Q13835 747 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 NCAPH2Q6IBW4 605 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 IGSF22Q8N9C0 903 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 ATP8B4Q8TF62 1192 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 GJA10Q969M2 543 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 NRBP2Q9NSY0 501 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 GTF2IRD1Q9UHL9 959 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 PPME1Q9Y570 386 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 WDFY4Q6ZS81 3184 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 GRIN2DO15399 1336 aa23.07■■□□□ 1.28
VPS53-210ENST00000571456 RFXAPO00287 272 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 HOXC8P31273 242 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 TECP42680 631 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 PSMC6P62333 389 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 SLC39A14Q15043 492 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 FAM47CQ5HY64 1035 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 TRIM50Q86XT4 487 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 HLA-CQ95604 372 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 HIPK3Q9H422 1215 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 ZSWIM4Q9H7M6 989 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 TUFT1Q9NNX1 390 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 LRWD1Q9UFC0 647 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 TELO2Q9Y4R8 837 aa23.06■■□□□ 1.28
VPS53-210ENST00000571456 POTEB3A0JP26 581 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 EML1O00423 815 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 LYPLA2O95372 231 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 XKR3Q5GH77 459 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 ZNF484Q5JVG2 852 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 POTEBQ6S5H4 581 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 C4orf19Q8IY42 314 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 CKAP2LQ8IYA6 745 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 USP28Q96RU2 1077 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 HSD17B14Q9BPX1 270 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 POLR3CQ9BUI4 534 aaPredicted RBP23.05■■□□□ 1.28
VPS53-210ENST00000571456 TRPC6Q9Y210 931 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 LOXHD1Q8IVV2 1947 aa23.05■■□□□ 1.28
VPS53-210ENST00000571456 C17orf102A2RUQ5 167 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 PRR33A8MZF0 331 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 SMIM10L2AP0DMW4 78 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 SMIM10L2BP0DMW5 78 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 LONP1P36776 959 aaKnown RBP23.04■■□□□ 1.28
VPS53-210ENST00000571456 PPFIA1Q13136 1202 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 PLCB4Q15147 1175 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 PTPAQ15257 358 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 EXOC8Q8IYI6 725 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 EIF2AK1Q9BQI3 630 aaKnown RBP23.04■■□□□ 1.28
VPS53-210ENST00000571456 RNPEPQ9H4A4 650 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 HDAC6Q9UBN7 1215 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 ZDHHC9Q9Y397 364 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 CLIC4Q9Y696 253 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 UMODL1Q5DID0 1318 aa23.04■■□□□ 1.28
VPS53-210ENST00000571456 POTEMA6NI47 508 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 PPP6R2O75170 966 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 OATP04181 439 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 XRCC6P12956 609 aaKnown RBP eCLIP23.03■■□□□ 1.28
VPS53-210ENST00000571456 ATP2A2P16615 1042 aaKnown RBP23.03■■□□□ 1.28
VPS53-210ENST00000571456 RPA1P27694 616 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 STK38Q15208 465 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 KRT79Q5XKE5 535 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 FAM173BQ6P4H8 233 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 OTUD6AQ7L8S5 288 aa23.03■■□□□ 1.28
VPS53-210ENST00000571456 KCNG4Q8TDN1 519 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms