RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 CCDC105Q8IYK2 499 aa19.33■□□□□ 0.68
CDH3-205ENST00000566808 TNPO1Q92973 898 aaKnown RBP19.33■□□□□ 0.68
CDH3-205ENST00000566808 ERVK-5Q9HDB9 667 aa19.33■□□□□ 0.68
CDH3-205ENST00000566808 TYW1Q9NV66 732 aaKnown RBP19.33■□□□□ 0.68
CDH3-205ENST00000566808 PCDHA2Q9Y5H9 948 aa19.33■□□□□ 0.68
CDH3-205ENST00000566808 HCFC2Q9Y5Z7 792 aa19.33■□□□□ 0.68
CDH3-205ENST00000566808 DENND3A2RUS2 1198 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 MGEA5O60502 916 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 KRT76Q01546 638 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 NFX1Q12986 1120 aaKnown RBP19.32■□□□□ 0.68
CDH3-205ENST00000566808 ANGPT1Q15389 498 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 TMEM266Q2M3C6 531 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 FAM102BQ5T8I3 360 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 SLC24A5Q71RS6 500 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 FLCNQ8NFG4 579 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 SMARCC2Q8TAQ2 1214 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 SEMA4AQ9H3S1 761 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 CWH43Q9H720 699 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 RGS18Q9NS28 235 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 PCDHB15Q9Y5E8 787 aa19.32■□□□□ 0.68
CDH3-205ENST00000566808 FANCMQ8IYD8 2048 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 SMIM35A0A1B0GVV1 85 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 CYTH3O43739 400 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 ATP9AO75110 1047 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 PDE4AP27815 886 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 ODR4Q5SWX8 454 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 PLCD3Q8N3E9 789 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 NME8Q8N427 588 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 CUL5Q93034 780 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 ADAM2Q99965 735 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 USTQ9Y2C2 406 aa19.31■□□□□ 0.68
CDH3-205ENST00000566808 EVPLQ92817 2033 aa19.3■□□□□ 0.68
CDH3-205ENST00000566808 C9IYK1 514 aa19.3■□□□□ 0.68
CDH3-205ENST00000566808 PIK3CDO00329 1044 aa19.3■□□□□ 0.68
CDH3-205ENST00000566808 KIAA1841Q6NSI8 718 aa19.3■□□□□ 0.68
CDH3-205ENST00000566808 RTP3Q9BQQ7 232 aa19.3■□□□□ 0.68
CDH3-205ENST00000566808 AZI2Q9H6S1 392 aa19.3■□□□□ 0.68
CDH3-205ENST00000566808 TMEM161AQ9NX61 479 aa19.3■□□□□ 0.68
CDH3-205ENST00000566808 CHD6Q8TD26 2715 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 CHD8Q9HCK8 2581 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 RPS6KA5O75582 802 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 LMNAP02545 664 aaKnown RBP19.29■□□□□ 0.68
CDH3-205ENST00000566808 FGFR1P11362 822 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 KRT17Q04695 432 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 MTMR1Q13613 665 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 SMC1AQ14683 1233 aaKnown RBP19.29■□□□□ 0.68
CDH3-205ENST00000566808 ANKRD45Q5TZF3 282 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 USP17L6PQ6QN14 398 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 TMC7Q7Z402 723 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 LRRC43Q8N309 656 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 DTWD2Q8NBA8 298 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 TRAPPC12Q8WVT3 735 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 ZNF558Q96NG5 402 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 DSCC1Q9BVC3 393 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 ELAC1Q9H777 363 aaKnown RBP19.29■□□□□ 0.68
CDH3-205ENST00000566808 ATP6V0A4Q9HBG4 840 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 DZANK1Q9NVP4 752 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 LIMD1Q9UGP4 676 aa19.29■□□□□ 0.68
CDH3-205ENST00000566808 MAP1BP46821 2468 aaKnown RBP19.28■□□□□ 0.68
CDH3-205ENST00000566808 ITGB5P18084 799 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 PUM1Q14671 1186 aaKnown RBP eCLIP19.28■□□□□ 0.68
CDH3-205ENST00000566808 KCNT2Q6UVM3 1135 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 KCNG4Q8TDN1 519 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 RILPL2Q969X0 211 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 PCYT2Q99447 389 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 TMEM117Q9H0C3 514 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 JPH1Q9HDC5 661 aaPredicted RBP19.28■□□□□ 0.68
CDH3-205ENST00000566808 DBR1Q9UK59 544 aaKnown RBP19.28■□□□□ 0.68
CDH3-205ENST00000566808 GINS2Q9Y248 185 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 CACNA1GO43497 2377 aa19.28■□□□□ 0.68
CDH3-205ENST00000566808 MEIS2O14770 477 aa19.27■□□□□ 0.68
CDH3-205ENST00000566808 HOXA2O43364 376 aa19.27■□□□□ 0.68
CDH3-205ENST00000566808 EOMESO95936 686 aa19.27■□□□□ 0.68
CDH3-205ENST00000566808 SDSP20132 328 aa19.27■□□□□ 0.68
CDH3-205ENST00000566808 RARS2Q5T160 578 aaKnown RBP19.27■□□□□ 0.68
CDH3-205ENST00000566808 PKD2L1Q9P0L9 805 aa19.27■□□□□ 0.68
CDH3-205ENST00000566808 NOC2LQ9Y3T9 749 aaKnown RBP19.27■□□□□ 0.68
CDH3-205ENST00000566808 C2orf71A6NGG8 1288 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 GPR182O15218 404 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 NPR3P17342 541 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 PLCB4Q15147 1175 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 MTHFD1LQ6UB35 978 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 KIAA2013Q8IYS2 634 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 MRPL43Q8N983 215 aaKnown RBP19.26■□□□□ 0.67
CDH3-205ENST00000566808 TMEM40Q8WWA1 233 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 CYP26B1Q9NR63 512 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 SPG21Q9NZD8 308 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 SLC9A2Q9UBY0 812 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 ST3GAL5Q9UNP4 418 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 UBIAD1Q9Y5Z9 338 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 C2orf16Q68DN1 1984 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 GPR179Q6PRD1 2367 aa19.26■□□□□ 0.67
CDH3-205ENST00000566808 PI15O43692 258 aa19.25■□□□□ 0.67
CDH3-205ENST00000566808 CLASP2O75122 1294 aaKnown RBP19.25■□□□□ 0.67
CDH3-205ENST00000566808 WEE2P0C1S8 567 aa19.25■□□□□ 0.67
CDH3-205ENST00000566808 PBX3P40426 434 aa19.25■□□□□ 0.67
CDH3-205ENST00000566808 ATAT1Q5SQI0 421 aa19.25■□□□□ 0.67
CDH3-205ENST00000566808 CYB5R4Q7L1T6 521 aa19.25■□□□□ 0.67
CDH3-205ENST00000566808 PLPPR4Q7Z2D5 763 aa19.25■□□□□ 0.67
CDH3-205ENST00000566808 DIAPH3Q9NSV4 1193 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms