RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TIGD1Q96MW7 591 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 SEZ6LQ9BYH1 1024 aa23.01■■□□□ 1.27
CLN3-212ENST00000564574 SLFN14P0C7P3 912 aa23■■□□□ 1.27
CLN3-212ENST00000564574 PLA2G4BP0C869 781 aa23■■□□□ 1.27
CLN3-212ENST00000564574 RARRES1P49788 294 aa23■■□□□ 1.27
CLN3-212ENST00000564574 XKR9Q5GH70 373 aa23■■□□□ 1.27
CLN3-212ENST00000564574 SYT2Q8N9I0 419 aaPredicted RBP23■■□□□ 1.27
CLN3-212ENST00000564574 A0A1W2PQ45 241 aaPredicted RBP22.99■■□□□ 1.27
CLN3-212ENST00000564574 A0A1W2PQY0 241 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 ARHGEF35A5YM69 484 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 RRN3P2A6NIE6 340 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 ACTN4O43707 911 aaKnown RBP22.99■■□□□ 1.27
CLN3-212ENST00000564574 SOX10P56693 466 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 PTPN11Q06124 597 aaPredicted RBP22.99■■□□□ 1.27
CLN3-212ENST00000564574 TARBP2Q15633 366 aaKnown RBP22.99■■□□□ 1.27
CLN3-212ENST00000564574 KANK3Q6NY19 840 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 KRBA2Q6ZNG9 492 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 SV2BQ7L1I2 683 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 SESTD1Q86VW0 696 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 EXOC8Q8IYI6 725 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 LRRC15Q8TF66 581 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 CEP170P1Q96L14 293 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 LRRC27Q9C0I9 530 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 BHMT2Q9H2M3 363 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 TNMDQ9H2S6 317 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 STARD7Q9NQZ5 370 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 CYP26B1Q9NR63 512 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 SERTAD1Q9UHV2 236 aa22.99■■□□□ 1.27
CLN3-212ENST00000564574 ZBTB39O15060 712 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 KINO60870 393 aaKnown RBP22.98■■□□□ 1.27
CLN3-212ENST00000564574 NR1I2O75469 434 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 SMIM10L2AP0DMW4 78 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 SMIM10L2BP0DMW5 78 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 INSRRP14616 1297 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 PPFIA1Q13136 1202 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 MCM6Q14566 821 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 PLA2G4FQ68DD2 849 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 NFRKBQ6P4R8 1299 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 TRMT1LQ7Z2T5 733 aaKnown RBP22.98■■□□□ 1.27
CLN3-212ENST00000564574 C7orf31Q8N865 590 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 CNNM3Q8NE01 707 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 KCND2Q9NZV8 630 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 NRCAMQ92823 1304 aa22.98■■□□□ 1.27
CLN3-212ENST00000564574 A0A087WWV3 80 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 A0A0U1RQG5 324 aaPredicted RBP22.97■■□□□ 1.27
CLN3-212ENST00000564574 RFC5P40937 340 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 SLC12A3P55017 1021 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 AMPD3Q01432 767 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 NFKBIBQ15653 356 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 NBPF20Q3BBV1 942 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 LONRF3Q496Y0 759 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 MTERF2Q49AM1 385 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 ELOA2Q8IYF1 753 aaPredicted RBP22.97■■□□□ 1.27
CLN3-212ENST00000564574 VTI1AQ96AJ9 217 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 JPH2Q9BR39 696 aaPredicted RBP22.97■■□□□ 1.27
CLN3-212ENST00000564574 KBTBD4Q9NVX7 518 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 DACT1Q9NYF0 836 aa22.97■■□□□ 1.27
CLN3-212ENST00000564574 KIAA0100Q14667 2235 aaKnown RBP22.96■■□□□ 1.27
CLN3-212ENST00000564574 TMEM150BA6NC51 233 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 DGAT1O75907 488 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 SSBP05455 408 aaKnown RBP eCLIP22.96■■□□□ 1.27
CLN3-212ENST00000564574 GNAT1P11488 350 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 HOXC8P31273 242 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 MNX1P50219 401 aaPredicted RBP22.96■■□□□ 1.27
CLN3-212ENST00000564574 NPEPPSP55786 919 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 CHMP4BP1P59074 171 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 ITGA7Q13683 1181 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 GRIK4Q16099 956 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 PADI6Q6TGC4 694 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 GPT2Q8TD30 523 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 CEP89Q96ST8 783 aa22.96■■□□□ 1.27
CLN3-212ENST00000564574 C17orf102A2RUQ5 167 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 ZBTB42B2RXF5 422 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 MAGEB2O15479 319 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 MYL1P05976 194 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 TBC1D8BQ0IIM8 1120 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 SLC43A3Q8NBI5 491 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 TIPINQ9BVW5 301 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 HDAC6Q9UBN7 1215 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 GTF2IRD1Q9UHL9 959 aa22.95■■□□□ 1.26
CLN3-212ENST00000564574 HOOK1Q9UJC3 728 aaKnown RBP22.95■■□□□ 1.26
CLN3-212ENST00000564574 MYH11P35749 1972 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 TRIP12Q14669 1992 aaPredicted RBP22.94■■□□□ 1.26
CLN3-212ENST00000564574 GRIN2DO15399 1336 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 GAS2O43903 313 aaKnown RBP22.94■■□□□ 1.26
CLN3-212ENST00000564574 MAFO75444 373 aaPredicted RBP22.94■■□□□ 1.26
CLN3-212ENST00000564574 COL6A1P12109 1028 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 POLGP54098 1239 aaPredicted RBP22.94■■□□□ 1.26
CLN3-212ENST00000564574 SKOR2Q2VWA4 1001 aaPredicted RBP22.94■■□□□ 1.26
CLN3-212ENST00000564574 RINT1Q6NUQ1 792 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 SH3RF1Q7Z6J0 888 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 GPBP1Q86WP2 473 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 LMBR1Q8WVP7 490 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 SLC7A3Q8WY07 619 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 PAGE5Q96GU1 130 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 DHX33Q9H6R0 707 aaKnown RBP22.94■■□□□ 1.26
CLN3-212ENST00000564574 ATP6V0A4Q9HBG4 840 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 BMP2KQ9NSY1 1161 aaPredicted RBP22.94■■□□□ 1.26
CLN3-212ENST00000564574 SETD4Q9NVD3 440 aa22.94■■□□□ 1.26
CLN3-212ENST00000564574 EVPLQ92817 2033 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms