RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 SYNE4Q8N205 404 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 NPLOC4Q8TAT6 608 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 FRS2Q8WU20 508 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 DNAAF4Q8WXU2 420 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 ARHGAP45Q92619 1136 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 C1orf159Q96HA4 380 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 FEZ1Q99689 392 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 SLKQ9H2G2 1235 aaPredicted RBP7.49□□□□□ -1.21
LRRC28-220ENST00000561253 NOB1Q9ULX3 412 aaKnown RBP7.49□□□□□ -1.21
LRRC28-220ENST00000561253 ZNF652Q9Y2D9 606 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 KIF13BQ9NQT8 1826 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 ABCC4O15439 1325 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 RNF123Q5XPI4 1314 aa7.49□□□□□ -1.21
LRRC28-220ENST00000561253 AFDNP55196 1824 aaKnown RBP7.48□□□□□ -1.21
LRRC28-220ENST00000561253 NPHP3-ACAD11A0A0J9YXS1 232 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 BLACEA4D250 179 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 DDX58O95786 925 aaKnown RBP7.48□□□□□ -1.21
LRRC28-220ENST00000561253 KCNA3P22001 575 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 PLCL1Q15111 1095 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 CRY2Q49AN0 593 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 PARP10Q53GL7 1025 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 HSP90AB3PQ58FF7 597 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 SLC10A5Q5PT55 438 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 E4F1Q66K89 784 aaPredicted RBP7.48□□□□□ -1.21
LRRC28-220ENST00000561253 CCDC191Q8NCU4 936 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 KREMEN2Q8NCW0 462 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 AGBL5Q8NDL9 886 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 LINS1Q8NG48 757 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 PI4K2BQ8TCG2 481 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 CCDC120Q96HB5 630 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 MYD88Q99836 296 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 NCOA5Q9HCD5 579 aaKnown RBP7.48□□□□□ -1.21
LRRC28-220ENST00000561253 PAK6Q9NQU5 681 aaPredicted RBP7.48□□□□□ -1.21
LRRC28-220ENST00000561253 ERVK13-1Q9NX77 482 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 TMEM59LQ9UK28 342 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 RCAN3Q9UKA8 241 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 ZNF281Q9Y2X9 895 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 CD2APQ9Y5K6 639 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 ANKRD36CQ5JPF3 1778 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 UTYO14607 1347 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 KIF16BQ96L93 1317 aa7.48□□□□□ -1.21
LRRC28-220ENST00000561253 ANKRD31Q8N7Z5 1873 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 PLD2O14939 933 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 FUT4P22083 530 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 POLD1P28340 1107 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 GABREP78334 506 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 LAPTM5Q13571 262 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 LRP8Q14114 963 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 GCKRQ14397 625 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 TKFCQ3LXA3 575 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 RALGPS1Q5JS13 557 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 ACBD5Q5T8D3 534 aaPredicted RBP7.47□□□□□ -1.21
LRRC28-220ENST00000561253 HLA-DQA1Q5Y7H0 255 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 IQCEQ6IPM2 695 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 DENND5AQ6IQ26 1287 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 SLC23A3Q6PIS1 610 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 ATF7IPQ6VMQ6 1270 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 KIAA0907Q7Z7F0 614 aaPredicted RBP7.47□□□□□ -1.21
LRRC28-220ENST00000561253 NLGN2Q8NFZ4 835 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 DCAF4Q8WV16 495 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 MAP6Q96JE9 813 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 MRPL4Q9BYD3 311 aaKnown RBP7.47□□□□□ -1.21
LRRC28-220ENST00000561253 ADAMTS10Q9H324 1103 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 PRDM7Q9NQW5 492 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 TNFRSF10DQ9UBN6 386 aa7.47□□□□□ -1.21
LRRC28-220ENST00000561253 TNRC6CQ9HCJ0 1690 aaKnown RBP7.47□□□□□ -1.21
LRRC28-220ENST00000561253 SCO2A0A1W2PP80 73 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 ALDH1L1O75891 902 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 PCCAP05165 728 aaPredicted RBP7.46□□□□□ -1.22
LRRC28-220ENST00000561253 ZGLP1P0C6A0 271 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 KCNAB2Q13303 367 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 NTRK3Q16288 839 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 NBPF5PQ86XG9 351 aaPredicted RBP7.46□□□□□ -1.22
LRRC28-220ENST00000561253 CPNE8Q86YQ8 564 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 JAMLQ86YT9 394 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 CNBD1Q8NA66 436 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 DIO2Q92813 273 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 PTPRN2Q92932 1015 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 FAM89AQ96GI7 184 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 KAZALD1Q96I82 304 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 SYT17Q9BSW7 474 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 UTP14AQ9BVJ6 771 aaKnown RBP7.46□□□□□ -1.22
LRRC28-220ENST00000561253 BRIP1Q9BX63 1249 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 USP44Q9H0E7 712 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 CWC25Q9NXE8 425 aaPredicted RBP7.46□□□□□ -1.22
LRRC28-220ENST00000561253 NDOR1Q9UHB4 597 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 SFMBT1Q9UHJ3 866 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 COL4A1P02462 1669 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 CDHR2Q9BYE9 1310 aa7.46□□□□□ -1.22
LRRC28-220ENST00000561253 N4BP2Q86UW6 1770 aaPredicted RBP7.46□□□□□ -1.22
LRRC28-220ENST00000561253 SNED1Q8TER0 1413 aa7.45□□□□□ -1.22
LRRC28-220ENST00000561253 COL11A2P13942 1736 aaPredicted RBP7.45□□□□□ -1.22
LRRC28-220ENST00000561253 SRGNP10124 158 aa7.45□□□□□ -1.22
LRRC28-220ENST00000561253 LTBRP36941 435 aa7.45□□□□□ -1.22
LRRC28-220ENST00000561253 HK2P52789 917 aa7.45□□□□□ -1.22
LRRC28-220ENST00000561253 CBX2Q14781 532 aaPredicted RBP7.45□□□□□ -1.22
LRRC28-220ENST00000561253 NFXL1Q6ZNB6 911 aa7.45□□□□□ -1.22
LRRC28-220ENST00000561253 MAMDC2Q7Z304 686 aaPredicted RBP7.45□□□□□ -1.22
LRRC28-220ENST00000561253 ANKS4BQ8N8V4 417 aa7.45□□□□□ -1.22
LRRC28-220ENST00000561253 LINC01599Q8WXQ3 324 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms