RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 LGALS2P05162 132 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 HOXC8P31273 242 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 MCM7P33993 719 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 NASPP49321 788 aaPredicted RBP13.26□□□□□ -0.29
LDLR-212ENST00000560467 ZNF174Q15697 407 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 NPY5RQ15761 445 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 TCEAL5Q5H9L2 206 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 TRIM50Q86XT4 487 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 TMEM87AQ8NBN3 555 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 RASGRP4Q8TDF6 673 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 SYAP1Q96A49 352 aaPredicted RBP13.26□□□□□ -0.29
LDLR-212ENST00000560467 CCDC34Q96HJ3 373 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 YME1L1Q96TA2 773 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 ANO3Q9BYT9 981 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 RAB34Q9BZG1 259 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 MLXIPQ9HAP2 919 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 TMEM260Q9NX78 707 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 CLIC4Q9Y696 253 aa13.26□□□□□ -0.29
LDLR-212ENST00000560467 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.25□□□□□ -0.29
LDLR-212ENST00000560467 GRXCR2A6NFK2 248 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 H3BRB1 525 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 MEIS2O14770 477 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 NEMFO60524 1076 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 UPP2O95045 317 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 CCND2P30279 289 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 PTPROQ16827 1216 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 TIGD5Q53EQ6 642 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 XRRA1Q6P2D8 792 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 KCNV1Q6PIU1 500 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 CCDC73Q6ZRK6 1079 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 KRI1Q8N9T8 703 aaKnown RBP13.25□□□□□ -0.29
LDLR-212ENST00000560467 LINC00301Q8NCQ3 95 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 NEK9Q8TD19 979 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 SEPT8Q92599 483 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 TUT1Q9H6E5 874 aaKnown RBP13.25□□□□□ -0.29
LDLR-212ENST00000560467 GDPD2Q9HCC8 539 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.25□□□□□ -0.29
LDLR-212ENST00000560467 TELO2Q9Y4R8 837 aa13.25□□□□□ -0.29
LDLR-212ENST00000560467 CUTAO60888 179 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 TXLNAP40222 546 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 CLK2P49760 499 aaKnown RBP13.24□□□□□ -0.29
LDLR-212ENST00000560467 ARHGAP4P98171 946 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 SEMA3FQ13275 785 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 GPM6BQ13491 265 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 TMEM266Q2M3C6 531 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 TPRNQ4KMQ1 711 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 ARL6IP4Q66PJ3 421 aaKnown RBP13.24□□□□□ -0.29
LDLR-212ENST00000560467 PPP4R3AQ6IN85 833 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 DTHD1Q6ZMT9 781 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 EP400NLQ6ZTU2 488 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 TMEM192Q8IY95 271 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 BANK1Q8NDB2 785 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 TOP1MTQ969P6 601 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 UIMC1Q96RL1 719 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 IFIH1Q9BYX4 1025 aaKnown RBP13.24□□□□□ -0.29
LDLR-212ENST00000560467 RNPEPQ9H4A4 650 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 SETD4Q9NVD3 440 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 FAM13BQ9NYF5 915 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 PCDHB6Q9Y5E3 794 aa13.24□□□□□ -0.29
LDLR-212ENST00000560467 PRR33A8MZF0 331 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 H3BNC9 293 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 NOP56O00567 594 aaKnown RBP13.23□□□□□ -0.29
LDLR-212ENST00000560467 TGFB3P10600 412 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 SREBF1P36956 1147 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 TOB1P50616 345 aaPredicted RBP13.23□□□□□ -0.29
LDLR-212ENST00000560467 MRPS9P82933 396 aaKnown RBP13.23□□□□□ -0.29
LDLR-212ENST00000560467 PTGDRQ13258 359 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 NBR1Q14596 966 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 ADALQ6DHV7 355 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 MOXD1Q6UVY6 613 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 SLFN12Q8IYM2 578 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 SAMD11Q96NU1 681 aa13.23□□□□□ -0.29
LDLR-212ENST00000560467 DDX25Q9UHL0 483 aaKnown RBP13.23□□□□□ -0.29
LDLR-212ENST00000560467 BAZ2BQ9UIF8 2168 aaKnown RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 A0A1W2PQ27 194 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 A0A1W2PQ64 194 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 A0A1W2PQD8 194 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 CAND2O75155 1236 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 CYP3A4P08684 503 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 MARCKSP29966 332 aaPredicted RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 SP4Q02446 784 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 ZP2Q05996 745 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 COL19A1Q14993 1142 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 CALCRLQ16602 461 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 UTP14CQ5TAP6 766 aaKnown RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 METTL7BQ6UX53 244 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 CYFIP1Q7L576 1253 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 LMBR1Q8WVP7 490 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 PABPC5Q96DU9 382 aaKnown RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 PGBD1Q96JS3 809 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 INPP4AQ96PE3 977 aaPredicted RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 GPR20Q99678 358 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 PYM1Q9BRP8 204 aaKnown RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 NSUN3Q9H649 340 aaKnown RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 LMBRD1Q9NUN5 540 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 TCEAL9Q9UHQ7 104 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 STK24Q9Y6E0 443 aa13.22□□□□□ -0.29
LDLR-212ENST00000560467 MORC2Q9Y6X9 1032 aaPredicted RBP13.22□□□□□ -0.29
LDLR-212ENST00000560467 FRMPD4Q14CM0 1322 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 SIP14410 1827 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms