RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ZNF286BP0CG31 522 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 CDC27P30260 824 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 PSEN2P49810 448 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 VCPP55072 806 aaKnown RBP12.52□□□□□ -0.41
SHMT2-216ENST00000554975 PTK7Q13308 1070 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 SYDE2Q5VT97 1194 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 BTNL9Q6UXG8 535 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 TRIM67Q6ZTA4 783 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 LUZP1Q86V48 1076 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 NOSTRINQ8IVI9 506 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 PBXIP1Q96AQ6 731 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 ZSCAN10Q96SZ4 725 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-216ENST00000554975 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.52□□□□□ -0.41
SHMT2-216ENST00000554975 SPTLC3Q9NUV7 552 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 FAM13BQ9NYF5 915 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 MYO10Q9HD67 2058 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 KAT6AQ92794 2004 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 HAS3O00219 553 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 GRM6O15303 877 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 UPP2O95045 317 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 CSPG5O95196 566 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 LINC00271P0C7V0 271 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 PDHBP11177 359 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 SYKP43405 635 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 NOVP48745 357 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 GSDMDP57764 484 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 IFIT1BQ5T764 474 aaKnown RBP12.51□□□□□ -0.41
SHMT2-216ENST00000554975 SEPT14Q6ZU15 432 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 DGKHQ86XP1 1220 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 DRC7Q8IY82 874 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 PNMA1Q8ND90 353 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 SAMD11Q96NU1 681 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 YME1L1Q96TA2 773 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 PYM1Q9BRP8 204 aaKnown RBP12.51□□□□□ -0.41
SHMT2-216ENST00000554975 KIAA1468Q9P260 1216 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 DACH1Q9UI36 760 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 CLIC4Q9Y696 253 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 PLXNA4Q9HCM2 1894 aa12.51□□□□□ -0.41
SHMT2-216ENST00000554975 GVINP1Q7Z2Y8 2422 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-216ENST00000554975 STXBP3O00186 592 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 F2P00734 622 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 GH1P01241 217 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 GOLGA8HP0CJ92 632 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 PFKFB1P16118 471 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 KIF5BP33176 963 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 NLRP12P59046 1061 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 ZNF543Q08ER8 600 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 MFSD10Q14728 455 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 IQCB1Q15051 598 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 SEC23AQ15436 765 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 PLEKHG4Q58EX7 1191 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 DNTTIP2Q5QJE6 756 aaKnown RBP12.5□□□□□ -0.41
SHMT2-216ENST00000554975 KANK3Q6NY19 840 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 RAB11FIP4Q86YS3 637 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 DIS3L2Q8IYB7 885 aaKnown RBP12.5□□□□□ -0.41
SHMT2-216ENST00000554975 C7orf31Q8N865 590 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 ENAHQ8N8S7 591 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-216ENST00000554975 KRI1Q8N9T8 703 aaKnown RBP12.5□□□□□ -0.41
SHMT2-216ENST00000554975 FANCBQ8NB91 859 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 DNERQ8NFT8 737 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 CTCFLQ8NI51 663 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-216ENST00000554975 TBC1D5Q92609 795 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 PHKBQ93100 1093 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 MAP3K14Q99558 947 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 POP1Q99575 1024 aaKnown RBP12.5□□□□□ -0.41
SHMT2-216ENST00000554975 COL20A1Q9P218 1284 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 LOXHD1Q8IVV2 1947 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 TTC3P53804 2025 aa12.5□□□□□ -0.41
SHMT2-216ENST00000554975 IKBKBO14920 756 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 ZNF202O95125 648 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 NDUFA8P51970 172 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 ZXDAP98168 799 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 SMAD4Q13485 552 aaKnown RBP12.49□□□□□ -0.41
SHMT2-216ENST00000554975 PTPAQ15257 358 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 KIAA0753Q2KHM9 967 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 AXDND1Q5T1B0 1012 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-216ENST00000554975 RESP18Q5W5W9 173 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 MTERF4Q7Z6M4 381 aaKnown RBP12.49□□□□□ -0.41
SHMT2-216ENST00000554975 FBXL6Q8N531 539 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 ZNF579Q8NAF0 562 aaKnown RBP12.49□□□□□ -0.41
SHMT2-216ENST00000554975 TOP1MTQ969P6 601 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 FAM217BQ9NTX9 383 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-216ENST00000554975 IMPACTQ9P2X3 320 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 HPSEQ9Y251 543 aa12.49□□□□□ -0.41
SHMT2-216ENST00000554975 CACNA1BQ00975 2339 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 A0A1B0GVL5 298 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 PRPF3O43395 683 aaKnown RBP12.48□□□□□ -0.41
SHMT2-216ENST00000554975 CBFA2T2O43439 604 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 RXRAP19793 462 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 CTNNB1P35222 781 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 KRT2P35908 639 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 THPOP40225 353 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 GNAQP50148 359 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 NOLC1Q14978 699 aaKnown RBP eCLIP12.48□□□□□ -0.41
SHMT2-216ENST00000554975 DGKDQ16760 1214 aa12.48□□□□□ -0.41
SHMT2-216ENST00000554975 GPATCH4Q5T3I0 446 aaKnown RBP12.48□□□□□ -0.41
SHMT2-216ENST00000554975 C11orf57Q6ZUT1 292 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-216ENST00000554975 SUGP1Q8IWZ8 645 aaKnown RBP12.48□□□□□ -0.41
SHMT2-216ENST00000554975 TRIML1Q8N9V2 468 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms