RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 PSAPP07602 524 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 USP11P51784 963 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 SSRP1Q08945 709 aaKnown RBP15.12■□□□□ 0.01
CPSF6-204ENST00000547486 NFX1Q12986 1120 aaKnown RBP15.12■□□□□ 0.01
CPSF6-204ENST00000547486 BTG3Q14201 252 aaPredicted RBP15.12■□□□□ 0.01
CPSF6-204ENST00000547486 NPY5RQ15761 445 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 PTPROQ16827 1216 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 TCEAL5Q5H9L2 206 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 SMAP1Q8IYB5 467 aaPredicted RBP15.12■□□□□ 0.01
CPSF6-204ENST00000547486 BANK1Q8NDB2 785 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 BBXQ8WY36 941 aaPredicted RBP15.12■□□□□ 0.01
CPSF6-204ENST00000547486 PPP1R16BQ96T49 567 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 FTHL17Q9BXU8 183 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 ERVK-5Q9HDB9 667 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 PDRG1Q9NUG6 133 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 TCF20Q9UGU0 1960 aaKnown RBP15.12■□□□□ 0.01
CPSF6-204ENST00000547486 COL4A6Q14031 1691 aa15.12■□□□□ 0.01
CPSF6-204ENST00000547486 COL1A2P08123 1366 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 ZNF862O60290 1169 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 RB1P06400 928 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 KCNA5P22460 613 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 CTNNB1P35222 781 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 GATMP50440 423 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 TRIM22Q8IYM9 498 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.11■□□□□ 0.01
CPSF6-204ENST00000547486 TBCKQ8TEA7 893 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 PCDHA4Q9UN74 947 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 ST3GAL5Q9UNP4 418 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 SAMM50Q9Y512 469 aa15.11■□□□□ 0.01
CPSF6-204ENST00000547486 MRPL42Q9Y6G3 142 aaKnown RBP15.11■□□□□ 0.01
CPSF6-204ENST00000547486 GPR32O75388 356 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 VTNP04004 478 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 UGCGQ16739 394 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 KIZQ2M2Z5 673 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 LEXMQ3ZCV2 418 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 NPAS4Q8IUM7 802 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 BLIDQ8IZY5 108 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 METTL13Q8N6R0 699 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 SLC5A5Q92911 643 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 RIT2Q99578 217 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 UNC45AQ9H3U1 944 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 CD320Q9NPF0 282 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 DISC1Q9NRI5 854 aa15.1■□□□□ 0.01
CPSF6-204ENST00000547486 CYP3A7-CYP3A51PA0A087WV96 503 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 WDR64B1ANS9 1081 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 CPLX1O14810 134 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 RPS6KA5O75582 802 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 DEXIO95424 95 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 TDP2O95551 362 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 CYP3A7P24462 503 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 CRYBB1P53674 252 aaPredicted RBP15.09■□□□□ 0.01
CPSF6-204ENST00000547486 SCRN1Q12765 414 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 CAMK1Q14012 370 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 COL19A1Q14993 1142 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 Q4G0T1 1027 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 PAN2Q504Q3 1202 aaKnown RBP15.09■□□□□ 0.01
CPSF6-204ENST00000547486 CMTR2Q8IYT2 770 aaKnown RBP15.09■□□□□ 0.01
CPSF6-204ENST00000547486 KHSRPQ92945 711 aaKnown RBP eCLIP15.09■□□□□ 0.017e-8■■■□□ 16.6
CPSF6-204ENST00000547486 OSMRQ99650 979 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 ADAM2Q99965 735 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 C11orf84Q9BUA3 381 aaPredicted RBP15.09■□□□□ 0.01
CPSF6-204ENST00000547486 NSUN3Q9H649 340 aaKnown RBP15.09■□□□□ 0.01
CPSF6-204ENST00000547486 ALG13Q9NP73 1137 aaKnown RBP15.09■□□□□ 0.01
CPSF6-204ENST00000547486 RGS18Q9NS28 235 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 KCNJ14Q9UNX9 436 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 PLAGL2Q9UPG8 496 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 TTC3P53804 2025 aa15.09■□□□□ 0.01
CPSF6-204ENST00000547486 H3BQ06 376 aaPredicted RBP15.08■□□□□ 0
CPSF6-204ENST00000547486 CHMP2AO43633 222 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 GAS7O60861 476 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 PSMD10O75832 226 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 IBSPP21815 317 aaPredicted RBP15.08■□□□□ 0
CPSF6-204ENST00000547486 DNAJB1P25685 340 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 SARSP49591 514 aaKnown RBP15.08■□□□□ 0
CPSF6-204ENST00000547486 CLCN3P51790 818 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 TIGD5Q53EQ6 642 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 LRCH2Q5VUJ6 765 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 EFCAB12Q6NXP0 572 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 FAM228AQ86W67 206 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 LRRC71Q8N4P6 559 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 LINC01465Q8N7H1 131 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 DAGLBQ8NCG7 672 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 NEK9Q8TD19 979 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 ADAMTS10Q9H324 1103 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 EPHX3Q9H6B9 360 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 GJB4Q9NTQ9 266 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 TCEAL9Q9UHQ7 104 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 TPCN1Q9ULQ1 816 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 RWDD3Q9Y3V2 267 aa15.08■□□□□ 0
CPSF6-204ENST00000547486 C9IYK1 514 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 GPR182O15218 404 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 MAGEB2O15479 319 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 CSPG5O95196 566 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 STBD1O95210 358 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 OATP04181 439 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 NEFLP07196 543 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 STAG3L1P0CL83 205 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 IL9P15248 144 aa15.07■□□□□ 0
CPSF6-204ENST00000547486 GTF2F1P35269 517 aaKnown RBP eCLIP15.07■□□□□ 0
CPSF6-204ENST00000547486 LTBRP36941 435 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms