RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PLEKHA4Q9H4M7 779 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 SYNPO2Q9UMS6 1093 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 FER1L6Q2WGJ9 1857 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 CCNE2O96020 404 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 TUBB4AP04350 444 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 H2AFXP16104 143 aaPredicted RBP12.18□□□□□ -0.46
CUX1-212ENST00000547394 HGSNATQ68CP4 663 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 MCTP2Q6DN12 878 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 ZNF280CQ8ND82 737 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 FIZ1Q96SL8 496 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 PNKPQ96T60 521 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 R3HDMLQ9H3Y0 253 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 AGO4Q9HCK5 861 aaKnown RBP12.18□□□□□ -0.46
CUX1-212ENST00000547394 JADE2Q9NQC1 790 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 ADAMTS1Q9UHI8 967 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 MYO6Q9UM54 1294 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 EIF3CLB5ME19 914 aaKnown RBP12.18□□□□□ -0.46
CUX1-212ENST00000547394 XRCC5P13010 732 aaKnown RBP12.18□□□□□ -0.46
CUX1-212ENST00000547394 KRT83P78385 493 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 SCYL3Q8IZE3 742 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 LPAR1Q92633 364 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 CEP63Q96MT8 703 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 NACC1Q96RE7 527 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 MMS19Q96T76 1030 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 EIF3CQ99613 913 aaKnown RBP12.18□□□□□ -0.46
CUX1-212ENST00000547394 SGIP1Q9BQI5 828 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 VPS33BQ9H267 617 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 HAUS4Q9H6D7 363 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 EHMT1Q9H9B1 1298 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 TUFT1Q9NNX1 390 aa12.18□□□□□ -0.46
CUX1-212ENST00000547394 BRCA2P51587 3418 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 A0A1W2PQJ5 194 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 K7ENM7 598 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 ZBED4O75132 1171 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 KIF5AQ12840 1032 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 EPHA7Q15375 998 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 RSRC2Q7L4I2 434 aaKnown RBP12.17□□□□□ -0.46
CUX1-212ENST00000547394 SRGAP1Q7Z6B7 1085 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 SYCP3Q8IZU3 236 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 PDCD2LQ9BRP1 358 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 ADM5C9JUS6 153 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 BACH1O14867 736 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 KRT86O43790 486 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 MAGEA1P43355 309 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 AMPD2Q01433 879 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 MAPK7Q13164 816 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 TMEM132BQ14DG7 1078 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 SFMBT2Q5VUG0 894 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 GDAP1L1Q96MZ0 367 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 GTPBP4Q9BZE4 634 aaKnown RBP12.17□□□□□ -0.46
CUX1-212ENST00000547394 TYW1Q9NV66 732 aaKnown RBP12.17□□□□□ -0.46
CUX1-212ENST00000547394 TCEAL9Q9UHQ7 104 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 PACSIN2Q9UNF0 486 aaPredicted RBP12.17□□□□□ -0.46
CUX1-212ENST00000547394 MYH10P35580 1976 aa12.17□□□□□ -0.46
CUX1-212ENST00000547394 A0A087X0T9 212 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 GOLGA8IPA6NC78 632 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 GOLGA8JA6NMD2 632 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 PDE2AO00408 941 aaPredicted RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 PLA2G6O60733 806 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 FAM228BP0C875 321 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 RPS12P25398 132 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 MATR3P43243 847 aaKnown RBP eCLIP12.16□□□□□ -0.465e-7■■■■□ 22.9
CUX1-212ENST00000547394 VAV2P52735 878 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 FIGNQ5HY92 759 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 B3GNT9Q6UX72 402 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 ZNF720Q7Z2F6 126 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 GOLGA1Q92805 767 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 SLC35C1Q96A29 364 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 CCDC43Q96MW1 224 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 PXMP2Q9NR77 195 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 GCNT4Q9P109 453 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 TRAF3IP3Q9Y228 551 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 ATAD5Q96QE3 1844 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 PDXKO00764 312 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 CALUO43852 315 aaPredicted RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 AFPP02771 609 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 PON1P27169 355 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 RNASE9P60153 205 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 DLG4P78352 724 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 SETQ01105 290 aaPredicted RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 TRAF1Q13077 416 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 EXOC3L4Q17RC7 722 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 EDRF1Q3B7T1 1238 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 NFRKBQ6P4R8 1299 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 RBM46Q8TBY0 533 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 SECISBP2LQ93073 1101 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 GANQ9H2C0 597 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 ANKZF1Q9H8Y5 726 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 GPRC5DQ9NZD1 345 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 DDX41Q9UJV9 622 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 PRDM4Q9UKN5 801 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 FRMPD4Q14CM0 1322 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 RPTORQ8N122 1335 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 SLC16A4O15374 487 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 KIF20AO95235 890 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 EPB41P11171 864 aaKnown RBP12.16□□□□□ -0.46
CUX1-212ENST00000547394 CBWD6Q4V339 395 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 CBWD3Q5JTY5 395 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 CBWD5Q5RIA9 395 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 TREML2Q5T2D2 321 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms