RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 CCNE1P24864 410 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 NF2P35240 595 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 COPB2P35606 906 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 PHKA2P46019 1235 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 FOXK2Q01167 660 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 LRRC63Q05C16 580 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 PPP2R5CQ13362 524 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 NOLC1Q14978 699 aaKnown RBP eCLIP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 NR1I3Q14994 352 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 SHROOM1Q2M3G4 852 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 KIAA1755Q5JYT7 1200 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 NBPF12Q5TAG4 269 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 SPECC1LQ69YQ0 1117 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 USP50Q70EL3 339 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 TAS1R3Q7RTX0 852 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 FCHSD1Q86WN1 690 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 CCDC65Q8IXS2 484 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 GUF1Q8N442 669 aaKnown RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 BEND7Q8N7W2 519 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 MB21D1Q8N884 522 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 NELFBQ8WX92 580 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 SLC5A5Q92911 643 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 LENG9Q96B70 501 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 DCPSQ96C86 337 aaKnown RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 CCDC51Q96ER9 411 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 PNMA5Q96PV4 448 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 WRNIP1Q96S55 665 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 NAA15Q9BXJ9 866 aaKnown RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 NUCKS1Q9H1E3 243 aaKnown RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 RRAGDQ9NQL2 400 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 BLOC1S4Q9NUP1 217 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 MAGEC2Q9UBF1 373 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 ADAMTS5Q9UNA0 930 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 DNM3Q9UQ16 869 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 RPTORQ8N122 1335 aa6.89□□□□□ -1.31
SYNE1-239ENST00000545694 COL11A1P12107 1806 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 MYH9P35579 1960 aaKnown RBP6.89□□□□□ -1.31
SYNE1-239ENST00000545694 KIAA1217Q5T5P2 1943 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 ZNF536O15090 1300 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 IGLV3-22A0A075B6J6 115 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 A0A1W2PQC6 194 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 FRMD3A2A2Y4 597 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 GOLGA6L9A6NEM1 432 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 PP2D1A8MPX8 630 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 SPATA31C2B4DYI2 1134 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 MSH4O15457 936 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 DKC1O60832 514 aaKnown RBP eCLIP6.88□□□□□ -1.31
SYNE1-239ENST00000545694 FLOT1O75955 427 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 GNA14O95837 355 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 GAP43P17677 238 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 PTGS1P23219 599 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 CDC25AP30304 524 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 INPP5BP32019 993 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 PRCPP42785 496 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 IREB2P48200 963 aaKnown RBP6.88□□□□□ -1.31
SYNE1-239ENST00000545694 PRELPP51888 382 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 FMR1Q06787 632 aaKnown RBP eCLIP6.88□□□□□ -1.31
SYNE1-239ENST00000545694 SPIRE1Q08AE8 756 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 COG2Q14746 738 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 PLA2G4EQ3MJ16 856 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 PRR16Q569H4 304 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 PCNX4Q63HM2 1172 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 ISM2Q6H9L7 571 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 CENPPQ6IPU0 288 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 CCDC174Q6PII3 467 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 TMC6Q7Z403 805 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 RDM1Q8NG50 284 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.88□□□□□ -1.31
SYNE1-239ENST00000545694 P2RX5Q93086 422 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 CDHR1Q96JP9 859 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 TSG101Q99816 390 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 MXRA8Q9BRK3 442 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 SYT17Q9BSW7 474 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 TANGO6Q9C0B7 1094 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 FHDC1Q9C0D6 1143 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-239ENST00000545694 BLZF1Q9H2G9 400 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 GPAMQ9HCL2 828 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 TBC1D22BQ9NU19 505 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 GGA3Q9NZ52 723 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 CSADQ9Y600 493 aa6.88□□□□□ -1.31
SYNE1-239ENST00000545694 LOC285556D6RIA3 1793 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 PAPPA2Q9BXP8 1791 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 WDR90Q96KV7 1748 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 A0A087WWV3 80 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 SHTN1A0MZ66 631 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 IQCA1LA6NCM1 817 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 B4DLN1 442 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 FAM86B1E9PN63 330 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 VWA5AO00534 786 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 CXCL11O14625 94 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 GRIN3BO60391 1043 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 STX10O60499 249 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 GAS7O60861 476 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 GPR37L1O60883 481 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 PSMD10O75832 226 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 EYA4O95677 639 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 EGFRP00533 1210 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 THBS1P07996 1170 aa6.87□□□□□ -1.31
SYNE1-239ENST00000545694 FAM86B2P0C5J1 330 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms