RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 RIC8AQ9NPQ8 531 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 PXMP2Q9NR77 195 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 MUTYHQ9UIF7 546 aa13.06□□□□□ -0.32
SRGAP1-205ENST00000542841 KIAA1217Q5T5P2 1943 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 COL4A6Q14031 1691 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CCDC194A0A1B0GVG4 234 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 A0A1W2PQ27 194 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 A0A1W2PQ64 194 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 A0A1W2PQD8 194 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 SPTLC2O15270 562 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CAND2O75155 1236 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CFBP00751 764 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CTNNB1P35222 781 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 ADCY7P51828 1080 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 SF3A1Q15459 793 aaKnown RBP13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CLUL1Q15846 466 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CTC1Q2NKJ3 1217 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CELF3Q5SZQ8 465 aaKnown RBP13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 REXO1Q8N1G1 1221 aaKnown RBP13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 FIBCD1Q8N539 461 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 APBB2Q92870 758 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 CUL5Q93034 780 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 C16orf70Q9BSU1 422 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 C11orf84Q9BUA3 381 aaPredicted RBP13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 LMAN2LQ9H0V9 348 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 PCDHA6Q9UN73 950 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 RWDD3Q9Y3V2 267 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 PCDHA8Q9Y5H6 950 aa13.05□□□□□ -0.32
SRGAP1-205ENST00000542841 C5orf67F2Z3F1 127 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 H3BRB1 525 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 MBTPS2O43462 519 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 SORBS3O60504 671 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 GGPS1O95749 300 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 RB1P06400 928 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 CTSHP09668 335 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 MYCLP12524 364 aaPredicted RBP13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 PTPN5P54829 565 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 SMAD4Q13485 552 aaKnown RBP13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 PTPAQ15257 358 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 ADALQ6DHV7 355 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 RNF135Q8IUD6 432 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 SAMD3Q8N6K7 520 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 GPT2Q8TD30 523 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 EDAQ92838 391 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 PRRX2Q99811 253 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 TUT1Q9H6E5 874 aaKnown RBP13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 PCDHA1Q9Y5I3 950 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 CLIC4Q9Y696 253 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 C5orf42Q9H799 3197 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 USP34Q70CQ2 3546 aa13.04□□□□□ -0.32
SRGAP1-205ENST00000542841 ZNF318Q5VUA4 2279 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 TREHO43280 583 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 PPP1R11O60927 126 aaPredicted RBP13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 SMIM10L2AP0DMW4 78 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 SMIM10L2BP0DMW5 78 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 TGFB3P10600 412 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 HOXC8P31273 242 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 BMPR1AP36894 532 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 CLK2P49760 499 aaKnown RBP13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 TOB1P50616 345 aaPredicted RBP13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 DLX2Q07687 328 aaPredicted RBP13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 HYAL1Q12794 435 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 AP3B2Q13367 1082 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 NONOQ15233 471 aaKnown RBP eCLIP13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 BMP8AQ7Z5Y6 402 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 PHOX2BQ99453 314 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 NAP1L4Q99733 375 aaKnown RBP13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 RNPEPQ9H4A4 650 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 MLXIPQ9HAP2 919 aa13.03□□□□□ -0.32
SRGAP1-205ENST00000542841 PIK3CDO00329 1044 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 LAD1O00515 517 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 GRM6O15303 877 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 CUTAO60888 179 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 GADD45BO75293 160 aaPredicted RBP13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 RGS20O76081 388 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 FOSP01100 380 aaPredicted RBP13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 GNAT1P11488 350 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 ME1P48163 572 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 HSD17B4P51659 736 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 CEBPZQ03701 1054 aaKnown RBP13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 TTC38Q5R3I4 469 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 PIK3AP1Q6ZUJ8 805 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 SUGP1Q8IWZ8 645 aaKnown RBP13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 PRSS33Q8NF86 280 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 PBXIP1Q96AQ6 731 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 PGBD1Q96JS3 809 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 PDCD2LQ9BRP1 358 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 IGFLR1Q9H665 355 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 PSTPIP2Q9H939 334 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 MAP3K20Q9NYL2 800 aaKnown RBP13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 CD207Q9UJ71 328 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 PCDHA7Q9UN72 937 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 RALGAPA2Q2PPJ7 1873 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 NLRC5Q86WI3 1866 aa13.02□□□□□ -0.33
SRGAP1-205ENST00000542841 NOP56O00567 594 aaKnown RBP13.01□□□□□ -0.33
SRGAP1-205ENST00000542841 TBX10O75333 385 aa13.01□□□□□ -0.33
SRGAP1-205ENST00000542841 LETM1O95202 739 aaPredicted RBP13.01□□□□□ -0.33
SRGAP1-205ENST00000542841 LGALS2P05162 132 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms