RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 C17orf102A2RUQ5 167 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 GOLGA6L4A6NEF3 574 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 SLC26A4O43511 780 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 STBD1O95210 358 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 OATP04181 439 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 INSRRP14616 1297 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 IGBP1P78318 339 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 ZNF200P98182 395 aaPredicted RBP17.12■□□□□ 0.33
LSM1-203ENST00000520755 SNW1Q13573 536 aaKnown RBP17.12■□□□□ 0.33
LSM1-203ENST00000520755 HIC1Q14526 733 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 GRIK4Q16099 956 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 PTGISQ16647 500 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 TPH2Q8IWU9 490 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 PDILTQ8N807 584 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 LMBR1Q8WVP7 490 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 FAM167AQ96KS9 214 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 TOX2Q96NM4 488 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 PLIN2Q99541 437 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 PRDM5Q9NQX1 630 aaPredicted RBP17.12■□□□□ 0.33
LSM1-203ENST00000520755 BLOC1S4Q9NUP1 217 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 FAM13BQ9NYF5 915 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 SEPT9Q9UHD8 586 aaPredicted RBP17.12■□□□□ 0.33
LSM1-203ENST00000520755 KCNH3Q9ULD8 1083 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 NOD1Q9Y239 953 aa17.12■□□□□ 0.33
LSM1-203ENST00000520755 A0A087WWV3 80 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 DKC1O60832 514 aaKnown RBP eCLIP17.11■□□□□ 0.33
LSM1-203ENST00000520755 NR1I2O75469 434 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 LYPLA2O95372 231 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 TXLNAP40222 546 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 MLLT1Q03111 559 aaPredicted RBP17.11■□□□□ 0.33
LSM1-203ENST00000520755 FAM160A1Q05DH4 1040 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 FAAP100Q0VG06 881 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 ZRSR1Q15695 479 aaKnown RBP17.11■□□□□ 0.33
LSM1-203ENST00000520755 TRAPPC12Q8WVT3 735 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 BBXQ8WY36 941 aaPredicted RBP17.11■□□□□ 0.33
LSM1-203ENST00000520755 PANK2Q9BZ23 570 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 DDX19AQ9NUU7 478 aaKnown RBP17.11■□□□□ 0.33
LSM1-203ENST00000520755 KIAA1024Q9UPX6 916 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 STK24Q9Y6E0 443 aa17.11■□□□□ 0.33
LSM1-203ENST00000520755 TMEM150BA6NC51 233 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 ZBTB39O15060 712 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 POLR2DO15514 142 aaKnown RBP17.1■□□□□ 0.33
LSM1-203ENST00000520755 ACTN4O43707 911 aaKnown RBP17.1■□□□□ 0.33
LSM1-203ENST00000520755 HBP1O60381 514 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 CD4P01730 458 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 CLTBP09497 229 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 GNAT1P11488 350 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 MUTP22033 750 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 SYKP43405 635 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 CCDC73Q6ZRK6 1079 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 C4orf19Q8IY42 314 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 DHX58Q96C10 678 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 CALML4Q96GE6 196 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 ZSWIM4Q9H7M6 989 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 PDLIM7Q9NR12 457 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 NRBP2Q9NSY0 501 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 TMEM39AQ9NV64 488 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 NRCAMQ92823 1304 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 SIP14410 1827 aa17.1■□□□□ 0.33
LSM1-203ENST00000520755 E9PMD0 336 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 TREHO43280 583 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 CYP2C9P11712 490 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 HOXC8P31273 242 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 MTERF2Q49AM1 385 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 XKR3Q5GH77 459 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 ZNF484Q5JVG2 852 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 PLA2G4FQ68DD2 849 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 SH3RF1Q7Z6J0 888 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 ZBTB10Q96DT7 871 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 SH2D3AQ9BRG2 576 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 CCDC39Q9UFE4 941 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 TUBE1Q9UJT0 475 aa17.09■□□□□ 0.33
LSM1-203ENST00000520755 ZMYND8Q9ULU4 1186 aaPredicted RBP17.09■□□□□ 0.33
LSM1-203ENST00000520755 TNRC18O15417 2968 aaPredicted RBP17.09■□□□□ 0.33
LSM1-203ENST00000520755 LTBP2Q14767 1821 aa17.08■□□□□ 0.33
LSM1-203ENST00000520755 COL1A2P08123 1366 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 RRN3P2A6NIE6 340 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 ZNF202O95125 648 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 YWHABP31946 246 aaKnown RBP17.08■□□□□ 0.32
LSM1-203ENST00000520755 STAT6P42226 847 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 LONRF3Q496Y0 759 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 RRAGBQ5VZM2 374 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 ANO5Q75V66 913 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 RASSF8Q8NHQ8 419 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 PIGOQ8TEQ8 1089 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 RAD54LQ92698 747 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 CDK5RAP3Q96JB5 506 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 CTAGE1Q96RT6 745 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 MTRQ99707 1265 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 NT5C3AQ9H0P0 336 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 DACT1Q9NYF0 836 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 PCDH10Q9P2E7 1040 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 STK17AQ9UEE5 414 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 PRKAG2Q9UGJ0 569 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 SERTAD1Q9UHV2 236 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 NR2E3Q9Y5X4 410 aa17.08■□□□□ 0.32
LSM1-203ENST00000520755 ZBTB42B2RXF5 422 aa17.07■□□□□ 0.32
LSM1-203ENST00000520755 SYN1P17600 705 aa17.07■□□□□ 0.32
LSM1-203ENST00000520755 ADAM17P78536 824 aa17.07■□□□□ 0.32
LSM1-203ENST00000520755 MARCH8Q5T0T0 291 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms