RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 TMEM266Q2M3C6 531 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 METTL7BQ6UX53 244 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 LRRC55Q6ZSA7 311 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 RSPH3Q86UC2 560 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 RSAD2Q8WXG1 361 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 RTKNQ9BST9 563 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 TOMM22Q9NS69 142 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 NCDNQ9UBB6 729 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 TUBE1Q9UJT0 475 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 ZNF215Q9UL58 517 aaPredicted RBP10.6□□□□□ -0.71
NUP54-211ENST00000512151 CA14Q9ULX7 337 aa10.6□□□□□ -0.71
NUP54-211ENST00000512151 IGSF9BQ9UPX0 1349 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 FGFR1P11362 822 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 EPCAMP16422 314 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 SDHBP21912 280 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 MARK3P27448 753 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 PDE4AP27815 886 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 CCND2P30279 289 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 MRPS9P82933 396 aaKnown RBP10.59□□□□□ -0.71
NUP54-211ENST00000512151 PAK2Q13177 524 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 ATAT1Q5SQI0 421 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 GPATCH4Q5T3I0 446 aaKnown RBP10.59□□□□□ -0.71
NUP54-211ENST00000512151 TMC7Q7Z402 723 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 C1orf210Q8IVY1 113 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 MRPL43Q8N983 215 aaKnown RBP10.59□□□□□ -0.71
NUP54-211ENST00000512151 JMJD4Q9H9V9 463 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 VAT1LQ9HCJ6 419 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 PARD6AQ9NPB6 346 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 SH2B1Q9NRF2 756 aaPredicted RBP10.59□□□□□ -0.71
NUP54-211ENST00000512151 PCDHB7Q9Y5E2 793 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 TRPV2Q9Y5S1 764 aa10.59□□□□□ -0.71
NUP54-211ENST00000512151 CNOT1A5YKK6 2376 aaKnown RBP10.58□□□□□ -0.72
NUP54-211ENST00000512151 PRR5-ARHGAP8B1AHC4 643 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 SPATA31C2B4DYI2 1134 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 KINO60870 393 aaKnown RBP10.58□□□□□ -0.72
NUP54-211ENST00000512151 N4BP1O75113 896 aaKnown RBP10.58□□□□□ -0.72
NUP54-211ENST00000512151 LRRN2O75325 713 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 HMMRO75330 724 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 LAG3P18627 525 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 ARHGAP8P85298 464 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 PPM1JQ5JR12 505 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 XRRA1Q6P2D8 792 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 TMC5Q6UXY8 1006 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 INPP4AQ96PE3 977 aaPredicted RBP10.58□□□□□ -0.72
NUP54-211ENST00000512151 RNF19AQ9NV58 838 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 WNT16Q9UBV4 365 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 PUF60Q9UHX1 559 aaKnown RBP10.58□□□□□ -0.72
NUP54-211ENST00000512151 SQORQ9Y6N5 450 aa10.58□□□□□ -0.72
NUP54-211ENST00000512151 COL4A3Q01955 1670 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 C2orf16Q68DN1 1984 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 C9IYK1 514 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 IGBP1P78318 339 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 IRX6P78412 446 aaPredicted RBP10.57□□□□□ -0.72
NUP54-211ENST00000512151 LMNB2Q03252 620 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 NEDD9Q14511 834 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 KCNT2Q6UVM3 1135 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 SLC22A17Q8WUG5 538 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 AUTS2Q8WXX7 1259 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 ZKSCAN3Q9BRR0 538 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 FOXQ1Q9C009 403 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 LRRCC1Q9C099 1032 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 CDHR5Q9HBB8 845 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 RTEL1Q9NZ71 1219 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 SSUH2Q9Y2M2 353 aa10.57□□□□□ -0.72
NUP54-211ENST00000512151 TCF7P36402 384 aaPredicted RBP10.56□□□□□ -0.72
NUP54-211ENST00000512151 SMC1AQ14683 1233 aaKnown RBP10.56□□□□□ -0.72
NUP54-211ENST00000512151 IER5Q5VY09 327 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 OTOP3Q7RTS5 596 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 FCHSD1Q86WN1 690 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 TRAPPC12Q8WVT3 735 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 ACSF2Q96CM8 615 aaPredicted RBP10.56□□□□□ -0.72
NUP54-211ENST00000512151 TTC14Q96N46 770 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 CASD1Q96PB1 797 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 ADAM2Q99965 735 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 CELF4Q9BZC1 486 aaKnown RBP10.56□□□□□ -0.72
NUP54-211ENST00000512151 CEP295Q9C0D2 2601 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 RGS18Q9NS28 235 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 DZANK1Q9NVP4 752 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 USP18Q9UMW8 372 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 SIT1Q9Y3P8 196 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 PCDHA1Q9Y5I3 950 aa10.56□□□□□ -0.72
NUP54-211ENST00000512151 SETXQ7Z333 2677 aaKnown RBP10.56□□□□□ -0.72
NUP54-211ENST00000512151 GSTTP1A0A1W2PQM5 241 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 RFX1P22670 979 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 NFX1Q12986 1120 aaKnown RBP10.55□□□□□ -0.72
NUP54-211ENST00000512151 PHLDB3Q6NSJ2 640 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 GPR149Q86SP6 731 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 SLC39A11Q8N1S5 342 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 GPR161Q8N6U8 529 aaKnown RBP10.55□□□□□ -0.72
NUP54-211ENST00000512151 GPR152Q8TDT2 470 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 TMEM40Q8WWA1 233 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 ZNF558Q96NG5 402 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 ZBTB40Q9NUA8 1239 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 SPG21Q9NZD8 308 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 METRNQ9UJH8 293 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 SMG5Q9UPR3 1016 aaKnown RBP10.55□□□□□ -0.72
NUP54-211ENST00000512151 NOC2LQ9Y3T9 749 aaKnown RBP10.55□□□□□ -0.72
NUP54-211ENST00000512151 FRMPD4Q14CM0 1322 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 DOCK8Q8NF50 2099 aa10.55□□□□□ -0.72
NUP54-211ENST00000512151 SPTLC1O15269 473 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms