RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ZNF713Q8N859 430 aaPredicted RBP13.84□□□□□ -0.19
UPF3A-210ENST00000493727 CCDC148Q8NFR7 591 aa13.84□□□□□ -0.19
UPF3A-210ENST00000493727 AIFM3Q96NN9 605 aa13.84□□□□□ -0.19
UPF3A-210ENST00000493727 NECAB3Q96P71 396 aaPredicted RBP13.84□□□□□ -0.19
UPF3A-210ENST00000493727 MTG1Q9BT17 334 aaPredicted RBP13.84□□□□□ -0.19
UPF3A-210ENST00000493727 AMNQ9BXJ7 453 aa13.84□□□□□ -0.19
UPF3A-210ENST00000493727 TRPV6Q9H1D0 765 aa13.84□□□□□ -0.19
UPF3A-210ENST00000493727 VPS54Q9P1Q0 977 aa13.84□□□□□ -0.19
UPF3A-210ENST00000493727 PCDHA11Q9Y5I1 949 aa13.84□□□□□ -0.19
UPF3A-210ENST00000493727 TRIP12Q14669 1992 aaPredicted RBP13.83□□□□□ -0.19
UPF3A-210ENST00000493727 MYL3P08590 195 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 MYOGP15173 224 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 PSMC6P62333 389 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 PURAQ00577 322 aaKnown RBP13.83□□□□□ -0.2
UPF3A-210ENST00000493727 GUCY1B3Q02153 619 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 GNL2Q13823 731 aaKnown RBP13.83□□□□□ -0.2
UPF3A-210ENST00000493727 SAFBQ15424 915 aaKnown RBP eCLIP13.83□□□□□ -0.2
UPF3A-210ENST00000493727 USH1GQ495M9 461 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 TMEM63BQ5T3F8 832 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 WWC2Q6AWC2 1192 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 TRAF7Q6Q0C0 670 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 MTMR8Q96EF0 704 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 BRMS1Q9HCU9 246 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 BARHL2Q9NY43 387 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 MYH7BA7E2Y1 1941 aa13.83□□□□□ -0.2
UPF3A-210ENST00000493727 STX6O43752 255 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 POU3F3P20264 500 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-210ENST00000493727 SYT1P21579 422 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 NLRP5P59047 1200 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 TFF2Q03403 129 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 PTPN11Q06124 597 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-210ENST00000493727 CTC1Q2NKJ3 1217 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 NFRKBQ6P4R8 1299 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 NSUN6Q8TEA1 469 aaKnown RBP13.82□□□□□ -0.2
UPF3A-210ENST00000493727 ZNF592Q92610 1267 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 SCLYQ96I15 445 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 IWS1Q96ST2 819 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 SH3GLB2Q9NR46 395 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 MRPL11Q9Y3B7 192 aaKnown RBP13.82□□□□□ -0.2
UPF3A-210ENST00000493727 PCDHA1Q9Y5I3 950 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 SLC4A7Q9Y6M7 1214 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 MUC6Q6W4X9 2439 aa13.82□□□□□ -0.2
UPF3A-210ENST00000493727 COL4A4P53420 1690 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-210ENST00000493727 STXBP3O00186 592 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 TXNP10599 105 aaKnown RBP13.81□□□□□ -0.2
UPF3A-210ENST00000493727 PDIA4P13667 645 aaKnown RBP13.81□□□□□ -0.2
UPF3A-210ENST00000493727 KCNQ1P51787 676 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 NUCB2P80303 420 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 FOXD4L5Q5VV16 416 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-210ENST00000493727 KRT40Q6A162 431 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 MCTP1Q6DN14 999 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 CCDC116Q8IYX3 515 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 FAM177A1Q8N128 213 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-210ENST00000493727 FOXD4L4Q8WXT5 416 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-210ENST00000493727 AAASQ9NRG9 546 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 CHMP5Q9NZZ3 219 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 KCNJ14Q9UNX9 436 aa13.81□□□□□ -0.2
UPF3A-210ENST00000493727 BAZ2BQ9UIF8 2168 aaKnown RBP13.81□□□□□ -0.2
UPF3A-210ENST00000493727 PPP1R11O60927 126 aaPredicted RBP13.8□□□□□ -0.2
UPF3A-210ENST00000493727 TIMP2P16035 220 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 ATP2A2P16615 1042 aaKnown RBP13.8□□□□□ -0.2
UPF3A-210ENST00000493727 RFC2P35250 354 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 FAM47CQ5HY64 1035 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 SAMD3Q8N6K7 520 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 FBXO18Q8NFZ0 1043 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 SYTL5Q8TDW5 730 aaPredicted RBP13.8□□□□□ -0.2
UPF3A-210ENST00000493727 RMDN3Q96TC7 470 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 C1QTNF1Q9BXJ1 281 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 C6orf50Q9HD87 102 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 GJB4Q9NTQ9 266 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 MAP3K20Q9NYL2 800 aaKnown RBP13.8□□□□□ -0.2
UPF3A-210ENST00000493727 MTCH2Q9Y6C9 303 aa13.8□□□□□ -0.2
UPF3A-210ENST00000493727 SMCO2A6NFE2 343 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 EPOPA6NHQ4 379 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 ST8SIA5O15466 376 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 GH1P01241 217 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 MMP1P03956 469 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 CA3P07451 260 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 ACTN1P12814 892 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 GNA11P29992 359 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 KRT2P35908 639 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 ADCY7P51828 1080 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 BFSP2Q13515 415 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 STXBP2Q15833 593 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 MICALL1Q8N3F8 863 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 RETREG2Q8NC44 543 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 BICD2Q8TD16 824 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 CUL5Q93034 780 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 FAM122AQ96E09 287 aa13.79□□□□□ -0.2
UPF3A-210ENST00000493727 TRMT13Q9NUP7 481 aaKnown RBP13.79□□□□□ -0.2
UPF3A-210ENST00000493727 POM121CA8CG34 1229 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 ARHGEF15O94989 841 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 ZSCAN22P10073 491 aaPredicted RBP13.78□□□□□ -0.2
UPF3A-210ENST00000493727 CYP2C9P11712 490 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 DDIT3P35638 169 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 SOX11P35716 441 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 WDR4P57081 412 aaKnown RBP13.78□□□□□ -0.2
UPF3A-210ENST00000493727 PKP1Q13835 747 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 AAK1Q2M2I8 961 aa13.78□□□□□ -0.2
UPF3A-210ENST00000493727 PPP1R26Q5T8A7 1209 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms