RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 SPATA31C1P0DKV0 1188 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 QARSP47897 775 aaKnown RBP21.6■■□□□ 1.05
CCM2-216ENST00000488727 PSMC5P62195 406 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 RESP18Q5W5W9 173 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 SLC39A5Q6ZMH5 540 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 TRMT1LQ7Z2T5 733 aaKnown RBP21.6■■□□□ 1.05
CCM2-216ENST00000488727 SLC43A3Q8NBI5 491 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 ATP6V0A1Q93050 837 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 BPIFA3Q9BQP9 254 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 CSRNP2Q9H175 543 aa21.6■■□□□ 1.05
CCM2-216ENST00000488727 TRIP12Q14669 1992 aaPredicted RBP21.59■■□□□ 1.05
CCM2-216ENST00000488727 GOLGA6L19H0YKK7 550 aa21.59■■□□□ 1.05
CCM2-216ENST00000488727 SLC26A2P50443 739 aa21.59■■□□□ 1.05
CCM2-216ENST00000488727 PRKCEQ02156 737 aa21.59■■□□□ 1.05
CCM2-216ENST00000488727 SPECC1Q5M775 1068 aa21.59■■□□□ 1.05
CCM2-216ENST00000488727 CATSPER3Q86XQ3 398 aa21.59■■□□□ 1.05
CCM2-216ENST00000488727 KRI1Q8N9T8 703 aaKnown RBP21.59■■□□□ 1.05
CCM2-216ENST00000488727 NAT10Q9H0A0 1025 aaKnown RBP21.59■■□□□ 1.05
CCM2-216ENST00000488727 KAT6AQ92794 2004 aa21.59■■□□□ 1.05
CCM2-216ENST00000488727 ARVCFO00192 962 aa21.58■■□□□ 1.05
CCM2-216ENST00000488727 STBD1O95210 358 aa21.58■■□□□ 1.05
CCM2-216ENST00000488727 LONP1P36776 959 aaKnown RBP21.58■■□□□ 1.05
CCM2-216ENST00000488727 HIC1Q14526 733 aa21.58■■□□□ 1.05
CCM2-216ENST00000488727 SNX17Q15036 470 aa21.58■■□□□ 1.05
CCM2-216ENST00000488727 TPH2Q8IWU9 490 aa21.58■■□□□ 1.05
CCM2-216ENST00000488727 NEK9Q8TD19 979 aa21.58■■□□□ 1.05
CCM2-216ENST00000488727 HDAC6Q9UBN7 1215 aa21.58■■□□□ 1.05
CCM2-216ENST00000488727 POTEB3A0JP26 581 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 SMIM10L2AP0DMW4 78 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 SMIM10L2BP0DMW5 78 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 RPA1P27694 616 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 CDK7P50613 346 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 ECM1Q16610 540 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 LRRC26Q2I0M4 334 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 NFRKBQ6P4R8 1299 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 POTEBQ6S5H4 581 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 SHC4Q6S5L8 630 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 USP49Q70CQ1 688 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 DHX40Q8IX18 779 aaKnown RBP21.58■■□□□ 1.04
CCM2-216ENST00000488727 ERMNQ8TAM6 284 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 SNX29Q8TEQ0 813 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 ATP8B4Q8TF62 1192 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 AK8Q96MA6 479 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 POLR3CQ9BUI4 534 aaPredicted RBP21.58■■□□□ 1.04
CCM2-216ENST00000488727 TRPC6Q9Y210 931 aa21.58■■□□□ 1.04
CCM2-216ENST00000488727 TMEM150BA6NC51 233 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 OATP04181 439 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 CCT6AP40227 531 aaKnown RBP21.57■■□□□ 1.04
CCM2-216ENST00000488727 SYKP43405 635 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 FAM47CQ5HY64 1035 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 C1orf53Q5VUE5 145 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 HAUS3Q68CZ6 603 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 C4orf19Q8IY42 314 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 ELOA2Q8IYF1 753 aaPredicted RBP21.57■■□□□ 1.04
CCM2-216ENST00000488727 C7orf31Q8N865 590 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 EPSTI1Q96J88 318 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 TRIM5Q9C035 493 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 ZSWIM4Q9H7M6 989 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 TUFT1Q9NNX1 390 aa21.57■■□□□ 1.04
CCM2-216ENST00000488727 ARID2Q68CP9 1835 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 ZBTB39O15060 712 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 INSRRP14616 1297 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 HOXC8P31273 242 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 KRT79Q5XKE5 535 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 POTEGQ6S5H5 508 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 SESTD1Q86VW0 696 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 BBXQ8WY36 941 aaPredicted RBP21.56■■□□□ 1.04
CCM2-216ENST00000488727 ZNF830Q96NB3 372 aaPredicted RBP21.56■■□□□ 1.04
CCM2-216ENST00000488727 KCNF1Q9H3M0 494 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 GTF2IRD1Q9UHL9 959 aa21.56■■□□□ 1.04
CCM2-216ENST00000488727 A0A087WWV3 80 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 ZBTB42B2RXF5 422 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 LYPLA2O95372 231 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 NLRP12P59046 1061 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 TRIM60Q495X7 471 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 GDF6Q6KF10 455 aaPredicted RBP21.55■■□□□ 1.04
CCM2-216ENST00000488727 ANO5Q75V66 913 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 LMBR1Q8WVP7 490 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 MRFAP1L1Q96HT8 127 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 SPTLC3Q9NUV7 552 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 SETD4Q9NVD3 440 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 BECN2A8MW95 431 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 HBP1O60381 514 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 ZNF200P98182 395 aaPredicted RBP21.55■■□□□ 1.04
CCM2-216ENST00000488727 PPFIA1Q13136 1202 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 XKR3Q5GH77 459 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 CABP7Q86V35 215 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 SPC24Q8NBT2 197 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 TRAPPC12Q8WVT3 735 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 SYMPKQ92797 1274 aaKnown RBP21.55■■□□□ 1.04
CCM2-216ENST00000488727 FAM167AQ96KS9 214 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 SH2D3AQ9BRG2 576 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 TUBE1Q9UJT0 475 aa21.55■■□□□ 1.04
CCM2-216ENST00000488727 DKC1O60832 514 aaKnown RBP eCLIP21.54■■□□□ 1.04
CCM2-216ENST00000488727 TPM2P07951 284 aa21.54■■□□□ 1.04
CCM2-216ENST00000488727 YWHABP31946 246 aaKnown RBP21.54■■□□□ 1.04
CCM2-216ENST00000488727 RTP1P59025 263 aa21.54■■□□□ 1.04
CCM2-216ENST00000488727 ADAM17P78536 824 aa21.54■■□□□ 1.04
CCM2-216ENST00000488727 PTPN11Q06124 597 aaPredicted RBP21.54■■□□□ 1.04
CCM2-216ENST00000488727 GRIK4Q16099 956 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms