RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PPFIA2O75334 1257 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 GOLGA8HP0CJ92 632 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 FBXO33Q7Z6M2 555 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 CCDC63Q8NA47 563 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 CCHCR1Q8TD31 782 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 GOLPH3Q9H4A6 298 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 BIN2Q9UBW5 565 aaPredicted RBP14.47□□□□□ -0.09
USP40-214ENST00000483519 NAGPAQ9UK23 515 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 SLC12A4Q9UP95 1085 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 CFAP73A6NFT4 308 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 POTEMA6NI47 508 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 ZBTB48P10074 688 aaPredicted RBP14.47□□□□□ -0.09
USP40-214ENST00000483519 ALKBH5Q6P6C2 394 aaKnown RBP14.47□□□□□ -0.09
USP40-214ENST00000483519 ZNF571Q7Z3V5 609 aaPredicted RBP14.47□□□□□ -0.09
USP40-214ENST00000483519 VPS36Q86VN1 386 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 TRIM6Q9C030 488 aaPredicted RBP14.47□□□□□ -0.09
USP40-214ENST00000483519 SAMD15Q9P1V8 674 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 COL4A1P02462 1669 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 A0A0A6YYK5 440 aaPredicted RBP14.46□□□□□ -0.09
USP40-214ENST00000483519 WTIPA6NIX2 430 aaPredicted RBP14.46□□□□□ -0.09
USP40-214ENST00000483519 MMEP08473 750 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 PRDX5P30044 214 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 RIPK1Q13546 671 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 IRF2BP2Q7Z5L9 587 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 SLFN11Q7Z7L1 901 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 TBC1D22AQ8WUA7 517 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 ARHGEF1Q92888 912 aaKnown RBP14.46□□□□□ -0.09
USP40-214ENST00000483519 DNAJC19Q96DA6 116 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 FAM212AQ96EL1 285 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 DYNLL2Q96FJ2 89 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 DPH5Q9H2P9 285 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP40-214ENST00000483519 PNMA2Q9UL42 364 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 ATP8A1Q9Y2Q0 1164 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 CAMTA2O94983 1202 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 ITGA4P13612 1032 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 NAA25Q14CX7 972 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 PPP2R5EQ16537 467 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 PPP4R3CPQ6ZMV5 832 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 COL23A1Q86Y22 540 aaPredicted RBP14.46□□□□□ -0.09
USP40-214ENST00000483519 CCDC65Q8IXS2 484 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 PROCA1Q8NCQ7 364 aaPredicted RBP14.46□□□□□ -0.09
USP40-214ENST00000483519 MDM1Q8TC05 714 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 FAXDC2Q96IV6 333 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 ZNF317Q96PQ6 595 aaPredicted RBP14.46□□□□□ -0.09
USP40-214ENST00000483519 NARFQ9UHQ1 456 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 MINPP1Q9UNW1 487 aa14.46□□□□□ -0.09
USP40-214ENST00000483519 NUDT17P0C025 328 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 CHN1P15882 459 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 KCNH2Q12809 1159 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 KCNK18Q7Z418 384 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 DZIP1Q86YF9 867 aaKnown RBP14.45□□□□□ -0.1
USP40-214ENST00000483519 TBC1D31Q96DN5 1066 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 PGM2Q96G03 612 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 NSRP1Q9H0G5 558 aaKnown RBP14.45□□□□□ -0.1
USP40-214ENST00000483519 BATF3Q9NR55 127 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 INTUQ9ULD6 942 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 CCDC189A1A4V9 331 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 CCDC169A6NNP5 214 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 hCG_1984214I3L0E3 225 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 SLC37A4O43826 429 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 CAND2O75155 1236 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 NEBLO76041 1014 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 SMARCA1P28370 1054 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 NPEPPSP55786 919 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 SATB1Q01826 763 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 SLMAPQ14BN4 828 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 PTPROQ16827 1216 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 CROCCP2Q86T23 111 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 DAAM2Q86T65 1068 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 NELFCDQ8IXH7 590 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 ZNF713Q8N859 430 aaPredicted RBP14.45□□□□□ -0.1
USP40-214ENST00000483519 MAB21L3Q8N8X9 362 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 SELENOSQ9BQE4 189 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 TXLNGYQ9BZA5 131 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 EBF2Q9HAK2 575 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 TTC7AQ9ULT0 858 aaPredicted RBP14.45□□□□□ -0.1
USP40-214ENST00000483519 STXBP5LQ9Y2K9 1186 aa14.45□□□□□ -0.1
USP40-214ENST00000483519 CETN3O15182 167 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 RPSAP08865 295 aaKnown RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 H2AFZP0C0S5 128 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 PRKCIP41743 596 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 MMP13P45452 471 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 ADAM9Q13443 819 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 EDRF1Q3B7T1 1238 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 H2AFVQ71UI9 128 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 PIGWQ7Z7B1 504 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 NEK9Q8TD19 979 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 CELF4Q9BZC1 486 aaKnown RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 CPVLQ9H3G5 476 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 KANSL2Q9H9L4 492 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 ZNF287Q9HBT7 754 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 TMEM260Q9NX78 707 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 PPP1R12BO60237 982 aaPredicted RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 TDP2O95551 362 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 UCHL3P15374 230 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 PAX7P23759 505 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 CALRP27797 417 aaKnown RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 HIBADHP31937 336 aaKnown RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 SPTY2D1Q68D10 685 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms