RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 MARK3P27448 753 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 RARRES1P49788 294 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 NFKBIBQ15653 356 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 KIAA0753Q2KHM9 967 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 LONRF3Q496Y0 759 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 KANK3Q6NY19 840 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 CXCL17Q6UXB2 119 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 KRBA2Q6ZNG9 492 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 SV2BQ7L1I2 683 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 EXOC8Q8IYI6 725 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 CEP57L1Q8IYX8 460 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 LRRC15Q8TF66 581 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 LARP4BQ92615 738 aaKnown RBP13.74□□□□□ -0.21
LINC00339-201ENST00000404210 DHX58Q96C10 678 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 GLT1D1Q96MS3 346 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 SEZ6LQ9BYH1 1024 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 LRRC27Q9C0I9 530 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 SERTAD1Q9UHV2 236 aa13.74□□□□□ -0.21
LINC00339-201ENST00000404210 COL1A2P08123 1366 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 SCN10AQ9Y5Y9 1956 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 RRN3P2A6NIE6 340 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 ACTN4O43707 911 aaKnown RBP13.73□□□□□ -0.21
LINC00339-201ENST00000404210 INSRRP14616 1297 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 SLC12A3P55017 1021 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 AMPD3Q01432 767 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 MCM6Q14566 821 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 TARBP2Q15633 366 aaKnown RBP13.73□□□□□ -0.21
LINC00339-201ENST00000404210 XKR9Q5GH70 373 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 TRMT1LQ7Z2T5 733 aaKnown RBP13.73□□□□□ -0.21
LINC00339-201ENST00000404210 GPT2Q8TD30 523 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 VTI1AQ96AJ9 217 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 CCDC34Q96HJ3 373 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 CEP170P1Q96L14 293 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 CEP89Q96ST8 783 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 BHMT2Q9H2M3 363 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 CYP26B1Q9NR63 512 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 KBTBD4Q9NVX7 518 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 SEPT9Q9UHD8 586 aaPredicted RBP13.73□□□□□ -0.21
LINC00339-201ENST00000404210 TRPC6Q9Y210 931 aa13.73□□□□□ -0.21
LINC00339-201ENST00000404210 NRCAMQ92823 1304 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 MNX1P50219 401 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-201ENST00000404210 NPEPPSP55786 919 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 PTPN11Q06124 597 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-201ENST00000404210 SKOR2Q2VWA4 1001 aaPredicted RBP13.72□□□□□ -0.21
LINC00339-201ENST00000404210 NBPF20Q3BBV1 942 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 RINT1Q6NUQ1 792 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 NFRKBQ6P4R8 1299 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 SH3RF1Q7Z6J0 888 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 SESTD1Q86VW0 696 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 CNNM3Q8NE01 707 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 TNMDQ9H2S6 317 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 PDLIM7Q9NR12 457 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 DACT1Q9NYF0 836 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 KCND2Q9NZV8 630 aa13.72□□□□□ -0.21
LINC00339-201ENST00000404210 A0A1W2PQ45 241 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-201ENST00000404210 A0A1W2PQY0 241 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 ARHGEF35A5YM69 484 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 TMEM150BA6NC51 233 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 ZBTB42B2RXF5 422 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 MAGEB2O15479 319 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 KINO60870 393 aaKnown RBP13.71□□□□□ -0.21
LINC00339-201ENST00000404210 DGAT1O75907 488 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 SMIM10L2AP0DMW4 78 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 SMIM10L2BP0DMW5 78 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 GNAT1P11488 350 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 ITGA7Q13683 1181 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 MTERF2Q49AM1 385 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 COL13A1Q5TAT6 717 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-201ENST00000404210 PLA2G4FQ68DD2 849 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 PADI6Q6TGC4 694 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 C1orf186Q6ZWK4 172 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 C7orf31Q8N865 590 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 SLC43A3Q8NBI5 491 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 PAGE5Q96GU1 130 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 CCDC43Q96MW1 224 aaKnown RBP13.71□□□□□ -0.21
LINC00339-201ENST00000404210 C7orf25Q9BPX7 421 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 JPH2Q9BR39 696 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-201ENST00000404210 DHX33Q9H6R0 707 aaKnown RBP13.71□□□□□ -0.21
LINC00339-201ENST00000404210 STARD7Q9NQZ5 370 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 BMP2KQ9NSY1 1161 aaPredicted RBP13.71□□□□□ -0.21
LINC00339-201ENST00000404210 HDAC6Q9UBN7 1215 aa13.71□□□□□ -0.21
LINC00339-201ENST00000404210 GRIN2DO15399 1336 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 IGKV6-21A0A0C4DH24 114 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 A0A0U1RQG5 324 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-201ENST00000404210 C17orf102A2RUQ5 167 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 MAFO75444 373 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-201ENST00000404210 SSBP05455 408 aaKnown RBP eCLIP13.7□□□□□ -0.22
LINC00339-201ENST00000404210 MYL1P05976 194 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 CYP11B2P19099 503 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 KLRC1P26715 233 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 HOXC8P31273 242 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 RFC5P40937 340 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 CHMP4BP1P59074 171 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 ADAM17P78536 824 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 MDM2Q00987 491 aaPredicted RBP13.7□□□□□ -0.22
LINC00339-201ENST00000404210 PPFIA1Q13136 1202 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 DHX8Q14562 1220 aaKnown RBP13.7□□□□□ -0.22
LINC00339-201ENST00000404210 GRIK4Q16099 956 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 ARSHQ5FYA8 562 aa13.7□□□□□ -0.22
LINC00339-201ENST00000404210 CNNM4Q6P4Q7 775 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms