RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 GRAMD4Q6IC98 578 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 GPBP1Q86WP2 473 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 LCORLQ8N3X6 602 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 METTL13Q8N6R0 699 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 ERMNQ8TAM6 284 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 CCT6BQ92526 530 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 GJA10Q969M2 543 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 OLFM3Q96PB7 478 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 MIS12Q9H081 205 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 PNMA3Q9UL41 463 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 FRMD4BQ9Y2L6 1034 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 A0A087X0T9 212 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 F8VZ95 297 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 PODXLO00592 558 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 FAM228BP0C875 321 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 FAM200BP0CF97 657 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 ITGA4P13612 1032 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 TFAP4Q01664 338 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 C1orf146Q5VVC0 180 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 MOV10L1Q9BXT6 1211 aaKnown RBP10.03□□□□□ -0.8
COL28A1-201ENST00000399429 PABPC3Q9H361 631 aaKnown RBP10.03□□□□□ -0.8
COL28A1-201ENST00000399429 NDE1Q9NXR1 346 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 RABGAP1Q9Y3P9 1069 aa10.03□□□□□ -0.8
COL28A1-201ENST00000399429 WDR19Q8NEZ3 1342 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 GLI2P10070 1586 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 SSU72P8A0A1W2PR75 194 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 MAGEA13PA6NCF6 341 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 DCDC2CA8MYV0 355 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 GCP02774 474 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 TXNRD1Q16881 649 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 CCDC92Q53HC0 331 aaPredicted RBP10.02□□□□□ -0.8
COL28A1-201ENST00000399429 C10orf76Q5T2E6 689 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 MIER3Q7Z3K6 550 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 NEK8Q86SG6 692 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 RASSF3Q86WH2 238 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 REXO1Q8N1G1 1221 aaKnown RBP10.02□□□□□ -0.8
COL28A1-201ENST00000399429 MAML1Q92585 1016 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 NMD3Q96D46 503 aaKnown RBP10.02□□□□□ -0.8
COL28A1-201ENST00000399429 RIC8AQ9NPQ8 531 aa10.02□□□□□ -0.8
COL28A1-201ENST00000399429 ABCA8O94911 1581 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 SPHKAPQ2M3C7 1700 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 CALUO43852 315 aaPredicted RBP10.02□□□□□ -0.81
COL28A1-201ENST00000399429 NOL3O60936 208 aaKnown RBP10.02□□□□□ -0.81
COL28A1-201ENST00000399429 LRRC63Q05C16 580 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 BLMHQ13867 455 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 CCDC137Q6PK04 289 aaKnown RBP10.02□□□□□ -0.81
COL28A1-201ENST00000399429 CCDC110Q8TBZ0 833 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 FBXO25Q8TCJ0 367 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 ITFG2Q969R8 447 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 USP40Q9NVE5 1235 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 LRRC10BA6NIK2 292 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 TTC36A6NLP5 189 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 GSTA2P09210 222 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 CALB2P22676 271 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 PBX1P40424 430 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 STXBP4Q6ZWJ1 553 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 SMC1BQ8NDV3 1235 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 SUPT20HQ8NEM7 779 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 SMYD3Q9H7B4 428 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 ALG13Q9NP73 1137 aaKnown RBP10.02□□□□□ -0.81
COL28A1-201ENST00000399429 UBN1Q9NPG3 1134 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 TMOD3Q9NYL9 352 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 TMOD2Q9NZR1 351 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 CNOT8Q9UFF9 292 aaKnown RBP10.02□□□□□ -0.81
COL28A1-201ENST00000399429 PCDHA4Q9UN74 947 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 PALLDQ8WX93 1383 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 PREX2Q70Z35 1606 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 SLC44A4Q53GD3 710 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 ERMARDQ5T6L9 678 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 CD302Q8IX05 232 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 CTAGE3PQ8IX95 158 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 MAB21L3Q8N8X9 362 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 PNMA1Q8ND90 353 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 GRAMD1AQ96CP6 724 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 ERGIC2Q96RQ1 377 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 ERP44Q9BS26 406 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 TSPYL2Q9H2G4 693 aaPredicted RBP10.02□□□□□ -0.81
COL28A1-201ENST00000399429 Q9H521 79 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 MAGEF1Q9HAY2 307 aa10.02□□□□□ -0.81
COL28A1-201ENST00000399429 RTN3O95197 1032 aaPredicted RBP10.01□□□□□ -0.81
COL28A1-201ENST00000399429 GSTT1P30711 240 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 HOMEZQ8IX15 550 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 DDX50Q9BQ39 737 aaKnown RBP10.01□□□□□ -0.81
COL28A1-201ENST00000399429 TRIM9Q9C026 710 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 RMI1Q9H9A7 625 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 NPHS2Q9NP85 383 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 ANLNQ9NQW6 1124 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 GCNT4Q9P109 453 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 PDP2Q9P2J9 529 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 KAT6BQ8WYB5 2073 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 CLIC2O15247 247 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 AFPP02771 609 aaKnown RBP10.01□□□□□ -0.81
COL28A1-201ENST00000399429 KRT5P13647 590 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 LMNB1P20700 586 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 PGM1P36871 562 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 BCAMP50895 628 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 USP11P51784 963 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 TNIP1Q15025 636 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 ZCWPW2Q504Y3 356 aa10.01□□□□□ -0.81
COL28A1-201ENST00000399429 SNX30Q5VWJ9 437 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms