RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 CLMNQ96JQ2 1002 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 CGNQ9P2M7 1197 aaKnown RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 DNAI1Q9UI46 699 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 PLIN4Q96Q06 1357 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 COL1A1P02452 1464 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 ZBTB22O15209 634 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 HBP1O60381 514 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 SNHG28P0DPA3 235 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 KCNA3P22001 575 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 MXI1P50539 228 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 TOB1P50616 345 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 CKAP4Q07065 602 aaKnown RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 PGM5Q15124 567 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 GOLGA1Q92805 767 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 ARID3AQ99856 593 aa9.04□□□□□ -0.96
PTPRD-204ENST00000397606 TOPORSQ9NS56 1045 aaPredicted RBP9.04□□□□□ -0.96
PTPRD-204ENST00000397606 CTAGE9A4FU28 777 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 KBTBD13C9JR72 458 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 LPXNO60711 386 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 PRR29P0C7W0 189 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 MCM3P25205 808 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 PRCPP42785 496 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 MAGEA1P43355 309 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 MFAP3P55082 362 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 BPIFB4P59827 614 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 POLR2FP61218 127 aaKnown RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 TFAMQ00059 246 aaKnown RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 HAUS6Q7Z4H7 955 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 GAS2L3Q86XJ1 694 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 MRPL4Q9BYD3 311 aaKnown RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 A1CFQ9NQ94 594 aaKnown RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 SAMSN1Q9NSI8 373 aaKnown RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 TMEM88BA6NKF7 163 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 NR3C1P04150 777 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 ARP10275 920 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 BMS1Q14692 1282 aaKnown RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 GNASQ5JWF2 1037 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 USP49Q70CQ1 688 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 METTL16Q86W50 562 aaKnown RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 ARHGEF37A1IGU5 675 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 NKRFO15226 690 aaKnown RBP eCLIP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 ZBTB48P10074 688 aaPredicted RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 TNNC1P63316 161 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 SLC30A10Q6XR72 485 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 SESTD1Q86VW0 696 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 BPIFA3Q9BQP9 254 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 THSD7AQ9UPZ6 1657 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 RRN3P2A6NIE6 340 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 SPDYE16A6NNV3 312 aaPredicted RBP9.03□□□□□ -0.96
PTPRD-204ENST00000397606 PIK3CDO00329 1044 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 ASAP2O43150 1006 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 ACTN2P35609 894 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 CATSPER3Q86XQ3 398 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 UNC45AQ9H3U1 944 aa9.03□□□□□ -0.96
PTPRD-204ENST00000397606 TCF7P36402 384 aaPredicted RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 ZNF568Q3ZCX4 644 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 RNF180Q86T96 592 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 ELOA2Q8IYF1 753 aaPredicted RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 TMEM106CQ9BVX2 250 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 NDST4Q9H3R1 872 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 EFCC1Q9HA90 598 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 NMRK2Q9NPI5 230 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 TOGARAM1Q9Y4F4 1720 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 GAS2O43903 313 aaKnown RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 OATP04181 439 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 ADORA2AP29274 412 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 PTGER2P43116 358 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 SLC26A2P50443 739 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 ALDH5A1P51649 535 aaPredicted RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 ADKP55263 362 aaKnown RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 OSTNP61366 133 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 TCP11X2Q5H9J9 407 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 NOL9Q5SY16 702 aaKnown RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 TYW1BQ6NUM6 668 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 THNSL1Q8IYQ7 743 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 CCDC155Q8N6L0 562 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 RNF149Q8NC42 400 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 ABHD16BQ9H3Z7 469 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 VTA1Q9NP79 307 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 SUCLA2Q9P2R7 463 aaPredicted RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 BZW2Q9Y6E2 419 aaKnown RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 UNCXA6NJT0 531 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 TMEM110-MUSTN1A8MSY1 372 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 SCP2P22307 547 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 PDE6CP51160 858 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 MUM1L1Q5H9M0 696 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 METTL7BQ6UX53 244 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 FBXO16Q8IX29 292 aaPredicted RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 IPO4Q8TEX9 1081 aaKnown RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 MIS12Q9H081 205 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 DNAJC18Q9H819 358 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 AGO4Q9HCK5 861 aaKnown RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 POLD4Q9HCU8 107 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 RNF216Q9NWF9 866 aaPredicted RBP9.02□□□□□ -0.97
PTPRD-204ENST00000397606 HESX1Q9UBX0 185 aa9.02□□□□□ -0.97
PTPRD-204ENST00000397606 IGKV6D-41A0A0C4DH26 115 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms