RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 DNAJB3Q8WWF6 145 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 ZNF516Q92618 1163 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 P2RX5Q93086 422 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 PPP2R3CQ969Q6 453 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 POP1Q99575 1024 aaKnown RBP10.04□□□□□ -0.8
CAPN3-208ENST00000397204 FTHL17Q9BXU8 183 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 RC3H2Q9HBD1 1191 aaKnown RBP10.04□□□□□ -0.8
CAPN3-208ENST00000397204 IL21Q9HBE4 155 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 JADE2Q9NQC1 790 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 TUBE1Q9UJT0 475 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 PLAGL2Q9UPG8 496 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 SUPT16HQ9Y5B9 1047 aaKnown RBP10.04□□□□□ -0.8
CAPN3-208ENST00000397204 PCDHB3Q9Y5E6 796 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 UBIAD1Q9Y5Z9 338 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 TAF6LQ9Y6J9 622 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 ADGRA3Q8IWK6 1321 aa10.04□□□□□ -0.8
CAPN3-208ENST00000397204 COL4A6Q14031 1691 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 SGSM2O43147 1006 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 MBTPS2O43462 519 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 MMP1P03956 469 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 STAG3L1P0CL83 205 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 CALM1P0DP23 149 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 CALM2P0DP24 149 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 CALM3P0DP25 149 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 INSRRP14616 1297 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 GSPT1P15170 499 aaKnown RBP10.03□□□□□ -0.8
CAPN3-208ENST00000397204 IRS1P35568 1242 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 MRPS6P82932 125 aaKnown RBP10.03□□□□□ -0.8
CAPN3-208ENST00000397204 MTMR1Q13613 665 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 HERC4Q5GLZ8 1057 aaPredicted RBP10.03□□□□□ -0.8
CAPN3-208ENST00000397204 CASC1Q6TDU7 716 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 RTN4RL1Q86UN2 441 aaPredicted RBP10.03□□□□□ -0.8
CAPN3-208ENST00000397204 TEX2Q8IWB9 1127 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 NME8Q8N427 588 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 SRBD1Q8N5C6 995 aaKnown RBP10.03□□□□□ -0.8
CAPN3-208ENST00000397204 TMEM87BQ96K49 555 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 MFSD14AQ96MC6 490 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 LY9Q9HBG7 655 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 CDY2AQ9Y6F7 541 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 SIP14410 1827 aa10.03□□□□□ -0.8
CAPN3-208ENST00000397204 CCDC69A6NI79 296 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 SPDYE3A6NKU9 549 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 ACTN4O43707 911 aaKnown RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 EYA4O95677 639 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 CD52P31358 61 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 MCM5P33992 734 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 LIFRP42702 1097 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 DLX2Q07687 328 aaPredicted RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 SMAD4Q13485 552 aaKnown RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 CAMK1Q14012 370 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 BLOC1S3Q6QNY0 202 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 NFXL1Q6ZNB6 911 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 PLPPR4Q7Z2D5 763 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 ALYREFQ86V81 257 aaKnown RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 NPAS4Q8IUM7 802 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 CMTR2Q8IYT2 770 aaKnown RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 SPPL3Q8TCT6 385 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 IGFLR1Q9H665 355 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 AZI2Q9H6S1 392 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 AGO3Q9H9G7 860 aaKnown RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 ALG13Q9NP73 1137 aaKnown RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 CD207Q9UJ71 328 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 PADI3Q9ULW8 664 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 PCDHA6Q9UN73 950 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 PCDHA8Q9Y5H6 950 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 PCDHA2Q9Y5H9 948 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 LAMA4Q16363 1823 aa10.02□□□□□ -0.81
CAPN3-208ENST00000397204 COL4A4P53420 1690 aaPredicted RBP10.02□□□□□ -0.81
CAPN3-208ENST00000397204 TTC3P53804 2025 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 M0QZ92 97 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 STXBP3O00186 592 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 PRC1O43663 620 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 PLEKHA8P1O95397 391 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 MARK3P27448 753 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 STAT5BP51692 787 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 IGBP1P78318 339 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 BMP8AQ7Z5Y6 402 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 RNF135Q8IUD6 432 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 FANCBQ8NB91 859 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 EDAQ92838 391 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 MSLNLQ96KJ4 702 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 FBXL18Q96ME1 805 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 PCYT2Q99447 389 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 MXRA8Q9BRK3 442 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 MYL10Q9BUA6 226 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 CELF4Q9BZC1 486 aaKnown RBP10.01□□□□□ -0.81
CAPN3-208ENST00000397204 JPH1Q9HDC5 661 aaPredicted RBP10.01□□□□□ -0.81
CAPN3-208ENST00000397204 KCNH7Q9NS40 1196 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 SLC9A2Q9UBY0 812 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 RBM8AQ9Y5S9 174 aaKnown RBP10.01□□□□□ -0.81
CAPN3-208ENST00000397204 ZDBF2Q9HCK1 2354 aa10.01□□□□□ -0.81
CAPN3-208ENST00000397204 KAT6AQ92794 2004 aa10□□□□□ -0.81
CAPN3-208ENST00000397204 CACNA1HO95180 2353 aa10□□□□□ -0.81
CAPN3-208ENST00000397204 SMIM35A0A1B0GVV1 85 aa10□□□□□ -0.81
CAPN3-208ENST00000397204 SH2B2O14492 632 aaPredicted RBP10□□□□□ -0.81
CAPN3-208ENST00000397204 ATG7O95352 703 aa10□□□□□ -0.81
CAPN3-208ENST00000397204 FOSP01100 380 aaPredicted RBP10□□□□□ -0.81
CAPN3-208ENST00000397204 ITGB1P05556 798 aa10□□□□□ -0.81
CAPN3-208ENST00000397204 SCG2P13521 617 aa10□□□□□ -0.81
CAPN3-208ENST00000397204 GTF2F1P35269 517 aaKnown RBP eCLIP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms