RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 GFPT2O94808 682 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 TBC1D8O95759 1140 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 KRT15P19012 456 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 ADCY8P40145 1251 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 PHKA2P46019 1235 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 EPHA7Q15375 998 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 OR6B2Q6IFH4 312 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 C16orf86Q6ZW13 317 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 VSTM4Q8IW00 320 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 TEX2Q8IWB9 1127 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 XXYLT1Q8NBI6 393 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 TOPORSQ9NS56 1045 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-204ENST00000367248 KIDINS220Q9ULH0 1771 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 ATP1A3P13637 1013 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 CCDC121Q6ZUS5 278 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 ECE1P42892 770 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF280CQ8ND82 737 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF18P17022 549 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 NRBP1Q9UHY1 535 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 SREBF2Q12772 1141 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 KRT71Q3SY84 523 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 UBN1Q9NPG3 1134 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 SLC12A6Q9UHW9 1150 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF148Q9UQR1 794 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 PCDHA10Q9Y5I2 948 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 KLRK1P26718 216 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 GOLGA8FQ08AF8 430 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 GOLGA8DPQ0D2H9 430 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 KRT31Q15323 416 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 CDO1Q16878 200 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 IGDCC4Q8TDY8 1250 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 KIAA1586Q9HCI6 787 aa12.53□□□□□ -0.4
SYNE1-204ENST00000367248 RRAGDQ9NQL2 400 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-204ENST00000367248 H7C0C1 242 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 CLDN3O15551 220 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 GUCY1A2P33402 732 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 ATP5OP48047 213 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 ANTXR2P58335 489 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 PPP4CP60510 307 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF667Q5HYK9 610 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 KIF28PB7ZC32 967 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 KIF11P52732 1056 aa12.52□□□□□ -0.4
SYNE1-204ENST00000367248 CPB1P15086 417 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 CACNB2Q08289 660 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-204ENST00000367248 ZNF568Q3ZCX4 644 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 MYRIPQ8NFW9 859 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 KAZALD1Q96I82 304 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 SLC16A4O15374 487 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 VIMP08670 466 aaKnown RBP12.52□□□□□ -0.41
SYNE1-204ENST00000367248 CASP1P29466 404 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 LXNQ9BS40 222 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 POTEFA5A3E0 1075 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 PP2D1A8MPX8 630 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 MED7O43513 233 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 POTEIP0CG38 1075 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 DYNLT1P63172 113 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 DNAJC24Q6P3W2 148 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 POTEGQ6S5H5 508 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 POTEEQ6S8J3 1075 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 ARMCX2Q7L311 632 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 AFG1LQ8WV93 481 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 CHMP6Q96FZ7 201 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 KDM6AO15550 1401 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-204ENST00000367248 NR3C1P04150 777 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 EIF4A3P38919 411 aaKnown RBP12.52□□□□□ -0.41
SYNE1-204ENST00000367248 PPFIA1Q13136 1202 aa12.52□□□□□ -0.41
SYNE1-204ENST00000367248 MYLK4Q86YV6 388 aaPredicted RBP12.52□□□□□ -0.41
SYNE1-204ENST00000367248 MTIF3Q9H2K0 278 aaKnown RBP12.52□□□□□ -0.41
SYNE1-204ENST00000367248 MAPK4P31152 587 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 ATP2C1P98194 919 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-204ENST00000367248 BAATQ14032 418 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-204ENST00000367248 TKFCQ3LXA3 575 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 FMR1NBQ8N0W7 255 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-204ENST00000367248 FHDC1Q9C0D6 1143 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-204ENST00000367248 DPH5Q9H2P9 285 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 VEGFAP15692 232 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-204ENST00000367248 HHATQ5VTY9 493 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 NAA35Q5VZE5 725 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 RWDD4Q6NW29 188 aaKnown RBP12.51□□□□□ -0.41
SYNE1-204ENST00000367248 GNASQ5JWF2 1037 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 THEM5Q8N1Q8 247 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 P3H4Q92791 437 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 GDAP1L1Q96MZ0 367 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 MTRQ99707 1265 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 OGFRQ9NZT2 677 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 NR3C2P08235 984 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 EPHB1P54762 984 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 TNFAIP2Q03169 654 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 COASYQ13057 564 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 TCP11X2Q5H9J9 407 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 AFAP1L1Q8TED9 768 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 HINFPQ9BQA5 517 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 MRPL47Q9HD33 250 aaKnown RBP12.51□□□□□ -0.41
SYNE1-204ENST00000367248 PRR12Q9ULL5 1215 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 PYCARDQ9ULZ3 195 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 SRGNP10124 158 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 RFX6Q8HWS3 928 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 CCDC68Q9H2F9 335 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 SEL1LQ9UBV2 794 aa12.51□□□□□ -0.41
SYNE1-204ENST00000367248 RNF219Q5W0B1 726 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms