RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 C2orf54Q08AI8 447 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 NNTQ13423 1086 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 GRAPQ13588 217 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 SPARCL1Q14515 664 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 TTC19Q6DKK2 380 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 PODNQ7Z5L7 613 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 VSTM4Q8IW00 320 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 ANKRD13CQ8N6S4 541 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 BEST2Q8NFU1 509 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 GRAPLQ8TC17 118 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 FSD1LQ9BXM9 530 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 TRIM55Q9BYV6 548 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 RRAGDQ9NQL2 400 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 PLEKHG2Q9H7P9 1386 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 A0A087WUV0 522 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 COPEO14579 308 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 MYL3P08590 195 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 SMARCA1P28370 1054 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 EIF4A3P38919 411 aaKnown RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 LRRC41Q15345 812 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 BBS9Q3SYG4 887 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 ITPRIPL1Q6GPH6 555 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 TTC23LQ6PF05 361 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 OR6B3Q8NGW1 331 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 TTC8Q8TAM2 541 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 NCLNQ969V3 563 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 NDST4Q9H3R1 872 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 TBC1D22BQ9NU19 505 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 GINM1Q9NU53 330 aa6.93□□□□□ -1.3
UPF2-201ENST00000356352 CHCHD3Q9NX63 227 aaKnown RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 FARP1Q9Y4F1 1045 aaPredicted RBP6.93□□□□□ -1.3
UPF2-201ENST00000356352 DPYSL4O14531 572 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 CD58P19256 250 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 AP3M2P53677 418 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 SEMA3FQ13275 785 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ZKSCAN8Q15776 578 aaPredicted RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 RWDD4Q6NW29 188 aaKnown RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 CATSPER4Q7RTX7 472 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 RAB42Q8N4Z0 105 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 TMEM35BQ8NCS4 154 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 OR9Q1Q8NGQ5 310 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 CDC26Q8NHZ8 85 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 SLC10A4Q96EP9 437 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 BRIP1Q9BX63 1249 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 CEP72Q9P209 647 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ANKARQ7Z5J8 1434 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 H3BRJ5 948 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ENC1O14682 589 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 CTIFO43310 598 aaKnown RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 MYO1DO94832 1006 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 PLCG1P19174 1290 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 STXBP2Q15833 593 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 Q3C1V9 767 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 TRIM59Q8IWR1 403 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 LINC00301Q8NCQ3 95 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 MAML1Q92585 1016 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 HSPH1Q92598 858 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 MTRQ99707 1265 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 HOXC10Q9NYD6 342 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 APOBEC2Q9Y235 224 aaKnown RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 ABCB11O95342 1321 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ARHGAP31Q2M1Z3 1444 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 FAM95CA0A1B0GW59 222 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 PPP1R12AO14974 1030 aaPredicted RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 ASAP2O43150 1006 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 HUS1O60921 280 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 NDUFA10O95299 355 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ANP32DO95626 131 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ASNSP08243 561 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 NR1D1P20393 614 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ADORA1P30542 326 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 SFNP31947 248 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 PRELPP51888 382 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 OCA2Q04671 838 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 IMPG1Q17R60 797 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ANGPTL8Q6UXH0 198 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 SYT2Q8N9I0 419 aaPredicted RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 SEPT8Q92599 483 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 EXOC4Q96A65 974 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 PAGE5Q96GU1 130 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 DDX50Q9BQ39 737 aaKnown RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 DDX56Q9NY93 547 aaKnown RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 DBNLQ9UJU6 430 aaKnown RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 STAP1Q9ULZ2 295 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 TRPA1O75762 1119 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 SYF2O95926 243 aaKnown RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 FTCDO95954 541 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 RCAN1P53805 252 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 KRT76Q01546 638 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 ERFEQ4G0M1 354 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 UNC13DQ70J99 1090 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 DGKHQ86XP1 1220 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 MB21D1Q8N884 522 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 N4BP2L2Q92802 583 aaPredicted RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 ZBED2Q9BTP6 218 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 KLHL8Q9P2G9 620 aaPredicted RBP6.92□□□□□ -1.3
UPF2-201ENST00000356352 RCOR1Q9UKL0 485 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 CAPN11Q9UMQ6 739 aa6.92□□□□□ -1.3
UPF2-201ENST00000356352 FAM170AA1A519 330 aa6.91□□□□□ -1.3
UPF2-201ENST00000356352 AP3B1O00203 1094 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms