RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 PPP6R3Q5H9R7 873 aaPredicted RBP5.9□□□□□ -1.47
PTPRB-202ENST00000334414 AKNAD1Q5T1N1 836 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 RESP18Q5W5W9 173 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 MIGA1Q8NAN2 632 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 XAGE3Q8WTP9 111 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 SIRT1Q96EB6 747 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 UBN1Q9NPG3 1134 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 PHF8Q9UPP1 1060 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 MMP1P03956 469 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 NR2F2P24468 414 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 ICA1Q05084 483 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 PLEKHM3Q6ZWE6 761 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 IKBIPQ70UQ0 350 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 KCTD6Q8NC69 237 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 SETDB2Q96T68 719 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 TRIM62Q9BVG3 475 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 SOWAHDA6NJG2 315 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 CD19P15391 556 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 PDE6AP16499 860 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 PPP1R18Q6NYC8 613 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 MMADHCQ9H3L0 296 aaPredicted RBP5.9□□□□□ -1.47
PTPRB-202ENST00000334414 GPR108Q9NPR9 543 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 CDC42BPGQ6DT37 1551 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 LIN7AO14910 233 aaPredicted RBP5.9□□□□□ -1.47
PTPRB-202ENST00000334414 LPXNO60711 386 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 PPP1R37O75864 691 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 CUL4AQ13619 759 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 KHDRBS2Q5VWX1 349 aaKnown RBP5.9□□□□□ -1.47
PTPRB-202ENST00000334414 FAM178BQ8IXR5 827 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 MAGED4Q96JG8 741 aa5.9□□□□□ -1.47
PTPRB-202ENST00000334414 ALDH8A1Q9H2A2 487 aaPredicted RBP5.9□□□□□ -1.47
PTPRB-202ENST00000334414 MTO1Q9Y2Z2 717 aaKnown RBP5.9□□□□□ -1.47
PTPRB-202ENST00000334414 SNTNA6NMZ2 147 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 AREL1O15033 823 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ITPRIPL1Q6GPH6 555 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 RIN3Q8TB24 985 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 JADE3Q92613 823 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SEL1LQ9UBV2 794 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 V9GY48 417 aaPredicted RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ARHGEF40Q8TER5 1519 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ITIH6Q6UXX5 1313 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 KLHL2O95198 593 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 LRRC8EQ6NSJ5 796 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 DARS2Q6PI48 645 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SPATA5Q8NB90 893 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 TADA1Q96BN2 335 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 FRMD8Q9BZ67 464 aaPredicted RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 NLRC4Q9NPP4 1024 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 PTCH1Q13635 1447 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ABCA9Q8IUA7 1624 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ATP7AQ04656 1500 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 FAM83GA6ND36 823 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 TOMM70O94826 608 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 FAM160B1Q5W0V3 765 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SUGP1Q8IWZ8 645 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ANKRD36BP1Q96IX9 119 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 EPAS1Q99814 870 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 MTA3Q9BTC8 594 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 BLZF1Q9H2G9 400 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 MLH3Q9UHC1 1453 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 B4E1Z4 1266 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 C6orf229H3BNL8 230 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 FAM107AO95990 144 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SLC9A1P19634 815 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 TRAPPC9Q96Q05 1148 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ROPN1BQ9BZX4 212 aaPredicted RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 RAD21L1Q9H4I0 556 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ROPN1Q9HAT0 212 aaPredicted RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SERPINB3P29508 390 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 PICALMQ13492 652 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 TRIM71Q2Q1W2 868 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 DNAJC24Q6P3W2 148 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ARHGAP27Q6ZUM4 889 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 PASD1Q8IV76 773 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 BTBD6Q96KE9 485 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 MRPL1Q9BYD6 325 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SNX25Q9H3E2 840 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 CPSF1Q10570 1443 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 FCGR1AP12314 374 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 PGM1P36871 562 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 CSTF3Q12996 717 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 TTLL12Q14166 644 aaPredicted RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 TTBK2Q6IQ55 1244 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ELAC2Q9BQ52 826 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 AATFQ9NY61 560 aaKnown RBP eCLIP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SLC5A4Q9NY91 659 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 RNF103-CHMP3A0A140T963 221 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 H0YC42 278 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ACCSQ96QU6 501 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 KLHL31Q9H511 634 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ANTXR1Q9H6X2 564 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 KANSL1LA0AUZ9 987 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SNUPNO95149 360 aaKnown RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 FGGP02679 453 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 CIITAP33076 1130 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SLC1A1P43005 524 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 YWHAHQ04917 246 aaPredicted RBP5.89□□□□□ -1.47
PTPRB-202ENST00000334414 FAM69CQ0P6D2 419 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 ARMCX4Q5H9R4 360 aa5.89□□□□□ -1.47
PTPRB-202ENST00000334414 SRRM3A6NNA2 597 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms